Difference between revisions of "OntoCAT"
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OntoCAT uses a given ontology to allow biologists to select specific triples that they want in the form as data fields. These triples, and eventually any given data, are stored in a triple store for future retrieval and editing. Storing the data in triples allows it to be queried using SPARQL queries. | OntoCAT uses a given ontology to allow biologists to select specific triples that they want in the form as data fields. These triples, and eventually any given data, are stored in a triple store for future retrieval and editing. Storing the data in triples allows it to be queried using SPARQL queries. | ||
+ | }} | ||
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+ | {{block | ||
+ | |title=Tarleton Web Forms | ||
+ | |title_background=#b0e2ff | ||
+ | |content= | ||
+ | The Tarleton Web Forms are web forms developed specifically for the [http://paige.cb.uga.edu/ Tarleton Research Group]. These forms are static forms that store given data in RDF format to allow for easier querying through SPARQL. | ||
+ | |||
+ | {{block | ||
+ | |title=Tarleton Web Forms Readme | ||
+ | |title_background=#ffffcc | ||
+ | |content= | ||
+ | ==GENE FORMS== | ||
+ | ====New Data==== | ||
+ | 1. Go to "http://knoesis1.wright.edu/TarletonFormManager/GeneKOForm.html" <br /> | ||
+ | 2. Fill information out on both tabs <br /> | ||
+ | 3. Click a field's corresponding help button to have the field explained (Note: "Date Completed" and "Date Started" are for future editing, and are not accessable at the time of data entry) <br /> | ||
+ | 4. Click "Enter Knock-Out Content" <br /> | ||
+ | (The browser will redirect to "http://knoesis1.wright.edu/TarletonFormManager/AlleleKOForm.jsp") <br /><br /> | ||
+ | 5. Fill information out on both tabs (Note: The second "Gene ID" field is there for implementation of future features, it is currently locked) <br /> | ||
+ | 6. Click "Add Allele Entry" to save the data for that allele (Note: If more than one allele exists for a given gene, repeat steps 5 and 6 until all allele information is entered) <br /> | ||
+ | 7. Click "Done adding Allele's" to save all the information <br /> | ||
+ | (The browser will redirect to "http://knoesis1.wright.edu/TarletonFormManager/DisplayPage.jsp") <br /><br /> | ||
+ | 8. If the entered data is not correct, click "Edit Knock-Out Details" at the bottom of the page to edit the information | ||
+ | |||
+ | |||
+ | ====Edit Data==== | ||
+ | 1. Go to "http://knoesis1.wright.edu/TarletonFormManager/GeneInfo.jsp" <br /> | ||
+ | 2. Click on the desired KO ID to edit <br /> | ||
+ | 3. Edit information, and submit (Note: This process will be like entering new data, except all the fields will be populated with the existing data) <br /> | ||
+ | |||
+ | |||
+ | ==STRAIN FORMS== | ||
+ | ====New Data==== | ||
+ | 1. Go to "http://knoesis1.wright.edu/TarletonFormManager/StrainForm.jsp" <br /> | ||
+ | 2. Input information <br /> | ||
+ | 3. Click "Submit Strain Entry" <br /> | ||
+ | (The browser will redirect to"http://knoesis1.wright.edu/TarletonFormManager/StrainCloneForm.html") <br /><br /> | ||
+ | 4. Input information <br /> | ||
+ | 5. Click "Submit Clone Entry" (Note: If inserting multiple clones, repeate steps 4 and 5 until all desired information is submitted) <br /> | ||
+ | 6. Click "Go to Plasmid Form" <br /> | ||
+ | (The browser will redirect to "http://knoesis1.wright.edu/TarletonFormManager/StrainPlasmidForm.jsp") <br /><br /> | ||
+ | 5. If there is a KO Plasmid to submit, select it and click "Submit Plasmid Entry" <br /> | ||
+ | 6. Cick "Select Clone Designate" <br /> | ||
+ | (The browser will redirect to "http://knoesis1.wright.edu/TarletonFormManager/CloneDesignate.jsp") <br /><br /> | ||
+ | 7. Select desired clone, and click "Enter Designated Clone" <br /> | ||
+ | (The browser will redirect to "http://knoesis1.wright.edu/TarletonFormManager/StrainDisplayPage.jsp") <br /><br /> | ||
+ | 8. If there is any incorrect information pertaining to the selected clone, click "Edit Strain Details" <br /> | ||
+ | |||
+ | |||
+ | ====Edit Data==== | ||
+ | 1. Go to "http://knoesis1.wright.edu/TarletonFormManager/StrainInfo.jsp" <br /> | ||
+ | 2. Click on the desired Strain ID to edit. <br /> | ||
+ | 3. Edit the information, and submit <br /> | ||
+ | (The browser will redirect to "http://knoesis1.wright.edu/TarletonFormManager/StrainDisplayPage.jsp") <br /><br /> | ||
+ | 4. Click "Edit Strain Details" to change the desired information (Note: This process will be like entering new data, except all the fields will be populated with the existing data) | ||
+ | }} | ||
}} | }} |
Latest revision as of 15:08, 28 July 2011
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