Difference between revisions of "Singleton Property"

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Singleton Property is a novel approach for making statements about statements in RDF without the use of RDF reification.
 
Singleton Property is a novel approach for making statements about statements in RDF without the use of RDF reification.
  
−
== Datasets ==
+
For the full paper of this approach, please refer to the [http://dl.acm.org/citation.cfm?id=2567973 WWW'14 paper at ACM]
 +
 
 +
 
 +
== Projects Evaluating the Singleton Property==
 +
 
 +
The singleton property approach has been evaluated at different teams. Here we list some of the projects that we are aware of.
 +
 
 +
=== Matvocab.org ===
 +
 
 +
Funded by the AFRL, this project is developing a collaborative framework, called MaterialsWay Wiki, for scientists to develop and integrate different vocabularies.
 +
The MaterialWays wiki is extended from MediaWiki to provide the annotation for the vocabulary terms.
 +
 
 +
The singleton property approach is adopted in the data model in order to represent the different definitions of the same term and their corresponding sources and licenses.
 +
The wiki is accessible at http://matvocab.org/wiki-dev/index.php/Main_Page
 +
The SPARQL endpoint of this project is accessible at http://matvocab.org/sparql
 +
 
 +
=== Bio Hackathon 2014 ===
 +
 
 +
The singleton property approach has been discussed at the bio hackathon community [http://2014.biohackathon.org/]. As a candidate for modeling provenance about RDF assertion, it would be evaluated together with existing approaches in the task [https://github.com/dbcls/bh14/wiki/Standardization-of-RDF-data-and-development-of-tools-ontologies Standardization of RDF data and development of tools ontologies]
 +
 
 +
=== PubChem RDF ===
 +
 
 +
The singleton property approach has been evaluated against other approaches at the [https://pubchem.ncbi.nlm.nih.gov/ PubChem] team.
 +
A manuscript has been submitted to the ISWC evaluation track.
 +
The datasets created by the team are accessible at http://figshare.com/articles/Provenance_RDF_Models/1399197
 +
 
 +
== Singleton Property Datasets ==
 
We implemented the Singleton Property approach in two datasets: BKR and YAGO2S.
 
We implemented the Singleton Property approach in two datasets: BKR and YAGO2S.
  
 
=== BKR ===
 
=== BKR ===
  
−
=== YAGO2S ===
+
The BKR datasets are implemented using five approaches: the singleton property (SP), the standard RDF reification (R) and three flavors C1, C2 and C3 of the PaCE. <br/>
 +
[https://docs.google.com/file/d/0B0YeaO2jtR-iYnVsV0c2R0dpeWM/edit?usp=sharing BKR-SP] <br/>
 +
[https://docs.google.com/file/d/0B0YeaO2jtR-idldWWkl2a1dGSDA/edit?usp=sharing BKR-R] <br/>
 +
[https://docs.google.com/file/d/0B0YeaO2jtR-idE1jYzMxNUtEVG8/edit?usp=sharing BKR-C1] <br/>
 +
[https://docs.google.com/file/d/0B0YeaO2jtR-iczlYcEtzaVB5Yzg/edit?usp=sharing BKR-C2] <br/>
 +
[https://docs.google.com/file/d/0B0YeaO2jtR-ieXhmZHZUcXpvc00/edit?usp=sharing BKR-C3] <br/>
  
−
== Queries ==
+
=== YAGO2S-SP ===
 +
 
 +
We created the RDF-compliant version of YAGO2S using the singleton property approach. The file can be downloaded via [https://docs.google.com/file/d/0B0YeaO2jtR-ic3NzVTlJQXZMejA/edit?usp=sharing yago2s-sp]
 +
 
 +
Below is the complete set of generic properties and their singleton properties in the YAGO2S-SP.
 +
<pre><nowiki>
 +
Generic property                                                                    Number of singleton property instances
 +
http://yago-knowledge.org/resource/extractionSource                              32598374
 +
http://www.w3.org/1999/02/22-rdf-syntax-ns#type                                  9019948
 +
http://www.w3.org/2000/01/rdf-schema#label                                        4200036
 +
http://yago-knowledge.org/resource/isPreferredMeaningOf                          2886014
 +
http://www.w3.org/2004/02/skos/core#prefLabel                                    2886010
 +
http://yago-knowledge.org/resource/isLocatedIn                                    1262563
 +
http://yago-knowledge.org/resource/hasGender                                      923364
 +
http://yago-knowledge.org/resource/hasFamilyName                                  838669
 +
http://yago-knowledge.org/resource/hasGivenName                                  827681
 +
http://yago-knowledge.org/resource/wasBornOnDate                                  804816
 +
http://yago-knowledge.org/resource/wasCreatedOnDate                              713167
 +
http://yago-knowledge.org/resource/occursSince                                    553116
 +
http://yago-knowledge.org/resource/isAffiliatedTo                                497263
 +
http://yago-knowledge.org/resource/playsFor                                      412388
 +
http://yago-knowledge.org/resource/hasLongitude                                  393717
 +
http://yago-knowledge.org/resource/hasLatitude                                    393250
 +
http://www.w3.org/2000/01/rdf-schema#subClassOf                                  382532
 +
http://yago-knowledge.org/resource/diedOnDate                                  361443
 +
http://yago-knowledge.org/resource/occursUntil                                    337116
 +
http://yago-knowledge.org/resource/created                                      278455
 +
http://yago-knowledge.org/resource/hasNumberOfPeople                              230745
 +
http://yago-knowledge.org/resource/hasWebsite                                    226393
 +
http://yago-knowledge.org/resource/wasBornIn                                      218757
 +
http://yago-knowledge.org/resource/happenedOnDate                                208894
 +
http://yago-knowledge.org/resource/happenedIn                                    194161
 +
http://yago-knowledge.org/resource/hasArea                                        129920
 +
http://yago-knowledge.org/resource/actedIn                                      127513
 +
http://yago-knowledge.org/resource/hasWordnetDomain                              87104
 +
http://yago-knowledge.org/resource/hasWonPrize                                    73763
 +
http://yago-knowledge.org/resource/byTransport                                    55871
 +
http://yago-knowledge.org/resource/hasDuration                                  54741
 +
http://yago-knowledge.org/resource/diedIn                                        54174
 +
http://yago-knowledge.org/resource/hasHeight                                      50863
 +
http://yago-knowledge.org/resource/isCitizenOf                                    46060
 +
http://yago-knowledge.org/resource/wasDestroyedOnDate                            42966
 +
http://yago-knowledge.org/resource/directed                                      41811
 +
http://yago-knowledge.org/resource/hasPopulationDensity                          39408
 +
http://yago-knowledge.org/resource/isConnectedTo                                  33834
 +
http://yago-knowledge.org/resource/livesIn                                        33628
 +
http://yago-knowledge.org/resource/hasMusicalRole                                32681
 +
http://yago-knowledge.org/resource/graduatedFrom                                  30389
 +
http://yago-knowledge.org/resource/hasMotto                                      27643
 +
http://yago-knowledge.org/resource/owns                                          26551
 +
http://yago-knowledge.org/resource/isMarriedTo                                    26325
 +
http://yago-knowledge.org/resource/influences                                    26306
 +
http://yago-knowledge.org/resource/wroteMusicFor                                24294
 +
http://yago-knowledge.org/resource/hasWeight                                    21256
 +
http://yago-knowledge.org/resource/hasPredecessor                                20574
 +
http://yago-knowledge.org/resource/hasSuccessor                                  18005
 +
http://yago-knowledge.org/resource/hasChild                                      17695
 +
http://yago-knowledge.org/resource/participatedIn                                16833
 +
http://yago-knowledge.org/resource/hasPages                                      15616
 +
http://yago-knowledge.org/resource/hasISBN                                      10917
 +
http://yago-knowledge.org/resource/isLeaderOf                                    10700
 +
http://yago-knowledge.org/resource/hasLength                                    9010
 +
http://yago-knowledge.org/resource/holdsPoliticalPosition                        6029
 +
http://yago-knowledge.org/resource/edited                                        5946
 +
http://yago-knowledge.org/resource/hasAirportCode                                5715
 +
http://yago-knowledge.org/resource/worksAt                                      5134
 +
http://yago-knowledge.org/resource/hasRevenue                                    4114
 +
http://yago-knowledge.org/resource/isPoliticianOf                                3752
 +
http://yago-knowledge.org/resource/hasAcademicAdvisor                            3340
 +
http://yago-knowledge.org/resource/hasCapital                                    1937
 +
http://yago-knowledge.org/resource/hasOfficialLanguage                          964
 +
http://yago-knowledge.org/resource/dealsWith                                    947
 +
http://yago-knowledge.org/resource/hasBudget                                    717
 +
http://yago-knowledge.org/resource/hasCurrency                                  667
 +
http://yago-knowledge.org/resource/exports                                      579
 +
http://yago-knowledge.org/resource/isKnownFor                                    500
 +
http://yago-knowledge.org/resource/isInterestedIn                                465
 +
http://yago-knowledge.org/resource/imports                                        391
 +
http://yago-knowledge.org/resource/hasTLD                                      270
 +
http://yago-knowledge.org/resource/hasGDP                                        241
 +
http://yago-knowledge.org/resource/hasExport                                      175
 +
http://yago-knowledge.org/resource/hasExpenses                                    174
 +
http://yago-knowledge.org/resource/hasImport                                      172
 +
http://yago-knowledge.org/resource/hasInflation                                  155
 +
http://yago-knowledge.org/resource/hasUnemployment                              145
 +
http://yago-knowledge.org/resource/hasEconomicGrowth                              141
 +
http://yago-knowledge.org/resource/hasGini                                        130
 +
http://yago-knowledge.org/resource/hasPoverty                                    84
 +
http://yago-knowledge.org/resource/hasImdb                                        9
 +
http://yago-knowledge.org/resource/startedOnDate                                  8
 +
</nowiki></pre>
 +
 
 +
== Query Set A ==
 +
Four sets of queries for R, C1, C2, and C3 are obtained from [[ProvenanceContextEntity]]
 +
We created an equivalent set of queries for SP approach as the following.
  
 
=== Q1 ===
 
=== Q1 ===
 +
<pre>
 +
# Query 1:
 +
# ------------------------------------------------------------------
 +
# All statements for a given PMID (e.g., 17209178)
 +
# ------------------------------------------------------------------
 +
PREFIX bkr:      <http://mor.nlm.nih.gov/bkr/>
 +
PREFIX dc:      <http://purl.org/dc/elements/1.1/>
 +
PREFIX provenir: <http://knoesis.wright.edu/provenir/>
 +
PREFIX rdf:      <http://www.w3.org/1999/02/22-rdf-syntax-ns#>
 +
PREFIX rdfs:    <http://www.w3.org/2000/01/rdf-schema#>
 +
PREFIX umls:    <http://mor.nlm.nih.gov/umls/>
 +
PREFIX meta:    <http://mor.nlm.nih.gov/umls/META_>
 +
PREFIX sn:      <http://mor.nlm.nih.gov/umls/SEMNET_>
 +
SELECT ?st_s_inst ?st_p_inst ?st_o_inst
 +
FROM <http://mor.nlm.nih.gov/bkr_instances_sp>
 +
WHERE {
 +
?st_s_inst ?st_p_inst ?st_o_inst .
 +
?st_p_inst provenir:derives_from bkr:PUBMED_99992-INST .
 +
}
 +
</pre>
  
 
=== Q2 ===
 
=== Q2 ===
 +
<pre>
 +
# Query 2: C0012963|STIMULATES|C0598981|2006-12-01|2008-12-01
 +
# ------------------------------------------------------------------
 +
# All sources for a given statement
 +
# (Lipoproteins  AFFECTS  Inflammatory cell)
 +
# ------------------------------------------------------------------
 +
PREFIX bkr:      <http://mor.nlm.nih.gov/bkr/>
 +
PREFIX dc:      <http://purl.org/dc/elements/1.1/>
 +
PREFIX provenir: <http://knoesis.wright.edu/provenir/>
 +
PREFIX rdf:      <http://www.w3.org/1999/02/22-rdf-syntax-ns#>
 +
PREFIX rdfs:    <http://www.w3.org/2000/01/rdf-schema#>
 +
PREFIX umls:    <http://mor.nlm.nih.gov/umls/>
 +
PREFIX meta:    <http://mor.nlm.nih.gov/umls/META_>
 +
PREFIX sn:      <http://mor.nlm.nih.gov/umls/SEMNET_>
 +
SELECT ?source_inst
 +
FROM <http://mor.nlm.nih.gov/bkr_instances_sp>
 +
WHERE {
 +
meta:C0012963 ?st_p_inst meta:C0598981 .
 +
?st_p_inst rdf:singletonPropertyOf sn:STIMULATES .
 +
?st_p_inst provenir:derives_from ?source_inst .
 +
}
 +
</pre>
  
 
=== Q3 ===
 
=== Q3 ===
 +
<pre>
 +
# Query 3:
 +
# ------------------------------------------------------------------
 +
# Frequency by source for 1 statement
 +
# ------------------------------------------------------------------
 +
PREFIX bkr:      <http://mor.nlm.nih.gov/bkr/>
 +
PREFIX dc:      <http://purl.org/dc/elements/1.1/>
 +
PREFIX provenir: <http://knoesis.wright.edu/provenir/>
 +
PREFIX rdf:      <http://www.w3.org/1999/02/22-rdf-syntax-ns#>
 +
PREFIX rdfs:    <http://www.w3.org/2000/01/rdf-schema#>
 +
PREFIX umls:    <http://mor.nlm.nih.gov/umls/>
 +
PREFIX meta:    <http://mor.nlm.nih.gov/umls/META_>
 +
PREFIX sn:      <http://mor.nlm.nih.gov/umls/SEMNET_>
 +
SELECT ?source_name count(?source_name)
 +
FROM <http://mor.nlm.nih.gov/bkr_instances_sp>
 +
FROM <http://mor.nlm.nih.gov/bkr_schema>
 +
WHERE {
 +
graph <http://mor.nlm.nih.gov/bkr_instances_sp> {
 +
meta:C0006307 ?st_p_inst ?o .
 +
?st_p_inst rdf:singletonPropertyOf sn:TREATS .
 +
?st_p_inst provenir:derives_from ?source_inst .
 +
?source_inst rdf:type ?source_cl .
 +
} .
 +
graph <http://mor.nlm.nih.gov/bkr_schema> {
 +
?source_cl rdfs:label ?source_name .
 +
} .
 +
}
 +
</pre>
 +
 +
=== Q4 ===
 +
<pre>
 +
# Query 4:
 +
# ------------------------------------------------------------------
 +
# Time profiling for a given statement
 +
# ------------------------------------------------------------------
 +
 +
PREFIX bkr:      <http://mor.nlm.nih.gov/bkr/>
 +
PREFIX dc:      <http://purl.org/dc/elements/1.1/>
 +
PREFIX provenir: <http://knoesis.wright.edu/provenir/>
 +
PREFIX rdf:      <http://www.w3.org/1999/02/22-rdf-syntax-ns#>
 +
PREFIX rdfs:    <http://www.w3.org/2000/01/rdf-schema#>
 +
PREFIX umls:    <http://mor.nlm.nih.gov/umls/>
 +
PREFIX meta:    <http://mor.nlm.nih.gov/umls/META_>
 +
PREFIX sn:      <http://mor.nlm.nih.gov/umls/SEMNET_>
 +
SELECT count(*)
 +
FROM <http://mor.nlm.nih.gov/bkr_instances_sp>
 +
FROM <http://mor.nlm.nih.gov/bkr_metadata>
 +
WHERE {
 +
graph <http://mor.nlm.nih.gov/bkr_instances_sp> {
 +
meta:%s ?st_p_inst ?o .
 +
?st_p_inst rdf:singletonPropertyOf sn:%s . FILTER (?o = meta:%s) .
 +
?st_p_inst provenir:derives_from ?source_inst .
 +
?source_inst rdf:type ?source_cl .
 +
} .
 +
graph <http://mor.nlm.nih.gov/bkr_metadata> {
 +
?source_inst dc:date ?source_date .
 +
FILTER(?source_date >= xsd:date("%s") && ?source_date < xsd:date("%s"))
 +
}
 +
}
 +
</pre>
 +
 +
=== Q5 ===
 +
<pre>
 +
# ------------------------------------------------------------------
 +
# Time profiling for a given statement
 +
# ------------------------------------------------------------------
 +
# --Using functions
 +
 +
PREFIX bkr:      <http://mor.nlm.nih.gov/bkr/>
 +
PREFIX dc:      <http://purl.org/dc/elements/1.1/>
 +
PREFIX provenir: <http://knoesis.wright.edu/provenir/>
 +
PREFIX rdf:      <http://www.w3.org/1999/02/22-rdf-syntax-ns#>
 +
PREFIX rdfs:    <http://www.w3.org/2000/01/rdf-schema#>
 +
PREFIX umls:    <http://mor.nlm.nih.gov/umls/>
 +
PREFIX meta:    <http://mor.nlm.nih.gov/umls/META_>
 +
PREFIX sn:      <http://mor.nlm.nih.gov/umls/SEMNET_>
 +
SELECT ?year count(*)
 +
FROM <http://mor.nlm.nih.gov/bkr_instances_sp>
 +
FROM <http://mor.nlm.nih.gov/bkr_schema>
 +
FROM <http://mor.nlm.nih.gov/bkr_metadata>
 +
where {
 +
    {
 +
        select (bif:year(?source_date)) as ?year
 +
        WHERE {
 +
graph <http://mor.nlm.nih.gov/bkr_instances_sp> {
 +
meta:%s ?st_p_inst ?o .
 +
?st_p_inst rdf:singletonPropertyOf sn:%s . FILTER(?o = meta:%s) .
 +
?st_p_inst provenir:derives_from ?source_inst .
 +
?source_inst rdf:type ?source_cl .
 +
} .
 +
            graph <http://mor.nlm.nih.gov/bkr_metadata> {
 +
                ?source_inst dc:date ?source_date .
 +
            }
 +
        }
 +
    }
 +
}
 +
order by ?year
 +
</pre>
 +
 +
== Query Set B ==
 +
We created five equivalent sets of SPARQL queries for SP approach as the following.
 +
 +
=== Q1 ===
 +
 +
==== Q1 - SP ====
 +
<pre>
 +
sparql
 +
PREFIX bkr:      <http://mor.nlm.nih.gov/bkr/>
 +
PREFIX dc:      <http://purl.org/dc/elements/1.1/>
 +
PREFIX provenir: <http://knoesis.wright.edu/provenir/>
 +
PREFIX rdf:      <http://www.w3.org/1999/02/22-rdf-syntax-ns#>
 +
PREFIX rdfs:    <http://www.w3.org/2000/01/rdf-schema#>
 +
PREFIX umls:    <http://mor.nlm.nih.gov/umls/>
 +
PREFIX meta:    <http://mor.nlm.nih.gov/umls/META_>
 +
PREFIX sn:      <http://mor.nlm.nih.gov/umls/SEMNET_>
 +
PREFIX pubmed:  <http://mor.nlm.nih.gov/bkr/PUBMED_>
 +
 +
select ?s ?p ?o
 +
where { graph <http://data.nlm.nih.gov/bkr_instances_sp>{
 +
?s ?sp1 ?o .
 +
?sp1 rdf:singletonPropertyOf ?p .
 +
?sp1 provenir:derives_from pubmed:10979521-INST .
 +
}}
 +
;
 +
</pre>
 +
==== Q1 - R ====
 +
<pre>
 +
sparql
 +
PREFIX bkr:      <http://mor.nlm.nih.gov/bkr/>
 +
PREFIX dc:      <http://purl.org/dc/elements/1.1/>
 +
PREFIX provenir: <http://knoesis.wright.edu/provenir/>
 +
PREFIX rdf:      <http://www.w3.org/1999/02/22-rdf-syntax-ns#>
 +
PREFIX rdfs:    <http://www.w3.org/2000/01/rdf-schema#>
 +
PREFIX umls:    <http://mor.nlm.nih.gov/umls/>
 +
PREFIX meta:    <http://mor.nlm.nih.gov/umls/META_>
 +
PREFIX sn:      <http://mor.nlm.nih.gov/umls/SEMNET_>
 +
PREFIX pubmed:  <http://mor.nlm.nih.gov/bkr/PUBMED_>
 +
PREFIX bkr_sn:  <http://mor.nlm.nih.gov/bkr/SEMNET_>
 +
PREFIX bkr_meta:  <http://mor.nlm.nih.gov/bkr/META_>
 +
 +
select ?s ?p ?o
 +
where { graph <http://data.nlm.nih.gov/bkr_instances_r>{
 +
?s ?p ?o .
 +
?st rdf:type rdf:Statement .
 +
?st rdf:subject ?s .
 +
?st rdf:predicate ?p .
 +
?st rdf:object ?o .
 +
?st provenir:derives_from pubmed:10979521-INST .
 +
}}
 +
</pre>
 +
==== Q1 - C1 ====
 +
<pre>
 +
sparql
 +
PREFIX bkr:      <http://mor.nlm.nih.gov/bkr/>
 +
PREFIX dc:      <http://purl.org/dc/elements/1.1/>
 +
PREFIX provenir: <http://knoesis.wright.edu/provenir/>
 +
PREFIX rdf:      <http://www.w3.org/1999/02/22-rdf-syntax-ns#>
 +
PREFIX rdfs:    <http://www.w3.org/2000/01/rdf-schema#>
 +
PREFIX umls:    <http://mor.nlm.nih.gov/umls/>
 +
PREFIX meta:    <http://mor.nlm.nih.gov/umls/META_>
 +
PREFIX sn:      <http://mor.nlm.nih.gov/umls/SEMNET_>
 +
PREFIX pubmed:  <http://mor.nlm.nih.gov/bkr/PUBMED_>
 +
 +
select ?s ?p ?o
 +
where { graph <http://data.nlm.nih.gov/bkr_instances_c1>{
 +
?s_inst ?p_inst ?o_inst .
 +
?s_inst rdf:type ?s .
 +
?p_inst rdfs:subPropertyOf ?p .
 +
?o_inst rdf:type ?o .
 +
?s_inst provenir:derives_from pubmed:10979521-INST .
 +
}}
 +
</pre>
 +
==== Q1 - C2 ====
 +
<pre>
 +
</sparql
 +
PREFIX bkr:      <http://mor.nlm.nih.gov/bkr/>
 +
PREFIX dc:      <http://purl.org/dc/elements/1.1/>
 +
PREFIX provenir: <http://knoesis.wright.edu/provenir/>
 +
PREFIX rdf:      <http://www.w3.org/1999/02/22-rdf-syntax-ns#>
 +
PREFIX rdfs:    <http://www.w3.org/2000/01/rdf-schema#>
 +
PREFIX umls:    <http://mor.nlm.nih.gov/umls/>
 +
PREFIX meta:    <http://mor.nlm.nih.gov/umls/META_>
 +
PREFIX sn:      <http://mor.nlm.nih.gov/umls/SEMNET_>
 +
PREFIX pubmed:  <http://mor.nlm.nih.gov/bkr/PUBMED_>
 +
 +
select ?s ?p ?o
 +
where { graph <http://data.nlm.nih.gov/bkr_instances_c2>{
 +
?s_inst ?p_inst ?o_inst .
 +
?s_inst rdf:type ?s .
 +
?p_inst rdfs:subPropertyOf ?p .
 +
?o_inst rdf:type ?o .
 +
?s_inst provenir:derives_from pubmed:10979521-INST .
 +
?p_inst provenir:derives_from pubmed:10979521-INST .
 +
}}
 +
;
 +
</pre>
 +
==== Q1 - C3 ====
 +
<pre>
 +
sparql
 +
PREFIX bkr:      <http://mor.nlm.nih.gov/bkr/>
 +
PREFIX dc:      <http://purl.org/dc/elements/1.1/>
 +
PREFIX provenir: <http://knoesis.wright.edu/provenir/>
 +
PREFIX rdf:      <http://www.w3.org/1999/02/22-rdf-syntax-ns#>
 +
PREFIX rdfs:    <http://www.w3.org/2000/01/rdf-schema#>
 +
PREFIX umls:    <http://mor.nlm.nih.gov/umls/>
 +
PREFIX meta:    <http://mor.nlm.nih.gov/umls/META_>
 +
PREFIX sn:      <http://mor.nlm.nih.gov/umls/SEMNET_>
 +
PREFIX pubmed:  <http://mor.nlm.nih.gov/bkr/PUBMED_>
 +
 +
select ?s ?p ?o
 +
where { graph <http://data.nlm.nih.gov/bkr_instances_c3>{
 +
?s_inst ?p_inst ?o_inst .
 +
?s_inst rdf:type ?s .
 +
?p_inst rdfs:subPropertyOf ?p .
 +
?o_inst rdf:type ?o .
 +
?s_inst provenir:derives_from pubmed:10979521-INST .
 +
?p_inst provenir:derives_from pubmed:10979521-INST .
 +
?o_inst provenir:derives_from pubmed:10979521-INST .
 +
}}
 +
;
 +
</pre>
 +
=== Q2 ===
 +
 +
==== Q2 - SP ====
 +
<pre>
 +
sparql
 +
PREFIX bkr:      <http://mor.nlm.nih.gov/bkr/>
 +
PREFIX dc:      <http://purl.org/dc/elements/1.1/>
 +
PREFIX provenir: <http://knoesis.wright.edu/provenir/>
 +
PREFIX rdf:      <http://www.w3.org/1999/02/22-rdf-syntax-ns#>
 +
PREFIX rdfs:    <http://www.w3.org/2000/01/rdf-schema#>
 +
PREFIX umls:    <http://mor.nlm.nih.gov/umls/>
 +
PREFIX meta:    <http://mor.nlm.nih.gov/umls/META_>
 +
PREFIX sn:      <http://mor.nlm.nih.gov/umls/SEMNET_>
 +
PREFIX pubmed:  <http://mor.nlm.nih.gov/bkr/PUBMED_>
 +
 +
select ?o1 ?o2 ?pmid2
 +
where { graph <http://data.nlm.nih.gov/bkr_instances_sp>{
 +
meta:C0543467 ?sp1 ?o1 .
 +
?sp1 rdf:singletonPropertyOf sn:TREATS .
 +
?sp1 provenir:derives_from pubmed:10979521-INST .
 +
 +
?o1 ?sp2 ?o2 .
 +
?sp2 rdf:singletonPropertyOf sn:CAUSES .
 +
?sp2 provenir:derives_from ?pmid2 .
 +
}}
 +
;
 +
</pre>
 +
==== Q2 - R ====
 +
<pre>
 +
sparql
 +
PREFIX bkr:      <http://mor.nlm.nih.gov/bkr/>
 +
PREFIX dc:      <http://purl.org/dc/elements/1.1/>
 +
PREFIX provenir: <http://knoesis.wright.edu/provenir/>
 +
PREFIX rdf:      <http://www.w3.org/1999/02/22-rdf-syntax-ns#>
 +
PREFIX rdfs:    <http://www.w3.org/2000/01/rdf-schema#>
 +
PREFIX umls:    <http://mor.nlm.nih.gov/umls/>
 +
PREFIX meta:    <http://mor.nlm.nih.gov/umls/META_>
 +
PREFIX sn:      <http://mor.nlm.nih.gov/umls/SEMNET_>
 +
PREFIX pubmed:  <http://mor.nlm.nih.gov/bkr/PUBMED_>
 +
PREFIX bkr_sn:  <http://mor.nlm.nih.gov/bkr/SEMNET_>
 +
PREFIX bkr_meta:  <http://mor.nlm.nih.gov/bkr/META_>
 +
 +
select ?o1 ?o2 ?pmid2
 +
where { graph <http://data.nlm.nih.gov/bkr_instances_r>{
 +
bkr_meta:C0543467-INST bkr_sn:TREATS ?o1 .
 +
?st1 rdf:type rdf:Statement .
 +
?st1 rdf:subject bkr_meta:C0543467-INST .
 +
?st1 rdf:predicate bkr_sn:TREATS .
 +
?st1 rdf:object ?o1 .
 +
?st1 provenir:derives_from pubmed:10979521-INST .
 +
 +
?o1 bkr_sn:CAUSES ?o2 .
 +
?st2 rdf:type rdf:Statement .
 +
?st2 rdf:subject ?o1 .
 +
?st2 rdf:predicate bkr_sn:CAUSES .
 +
?st2 rdf:object ?o2 .
 +
?st2 provenir:derives_from ?pmid2 .
 +
}}
 +
;
 +
</pre>
 +
==== Q2 - C1 ====
 +
<pre>
 +
sparql
 +
PREFIX bkr:      <http://mor.nlm.nih.gov/bkr/>
 +
PREFIX dc:      <http://purl.org/dc/elements/1.1/>
 +
PREFIX provenir: <http://knoesis.wright.edu/provenir/>
 +
PREFIX rdf:      <http://www.w3.org/1999/02/22-rdf-syntax-ns#>
 +
PREFIX rdfs:    <http://www.w3.org/2000/01/rdf-schema#>
 +
PREFIX umls:    <http://mor.nlm.nih.gov/umls/>
 +
PREFIX meta:    <http://mor.nlm.nih.gov/umls/META_>
 +
PREFIX sn:      <http://mor.nlm.nih.gov/umls/SEMNET_>
 +
PREFIX pubmed:  <http://mor.nlm.nih.gov/bkr/PUBMED_>
 +
 +
select ?o1 ?o2 ?pmid2
 +
where { graph <http://data.nlm.nih.gov/bkr_instances_c1>{
 +
?s_inst_1 ?p_inst_1 ?o_inst_1 .
 +
?s_inst_1 rdf:type meta:C0543467 .
 +
?p_inst_1 rdfs:subPropertyOf sn:TREATS .
 +
?o_inst_1 rdf:type ?o1 .
 +
?s_inst_1 provenir:derives_from pubmed:10979521-INST .
 +
 +
?s_inst_2 ?p_inst_2 ?o_inst_2 .
 +
?s_inst_2 rdf:type ?o1 .
 +
?p_inst_2 rdfs:subPropertyOf sn:CAUSES .
 +
?o_inst_2 rdf:type ?o2 .
 +
?s_inst_2 provenir:derives_from ?pmid2 .
 +
}}
 +
;
 +
</pre>
 +
 +
==== Q2 - C2 ====
 +
<pre>
 +
sparql
 +
PREFIX bkr:      <http://mor.nlm.nih.gov/bkr/>
 +
PREFIX dc:      <http://purl.org/dc/elements/1.1/>
 +
PREFIX provenir: <http://knoesis.wright.edu/provenir/>
 +
PREFIX rdf:      <http://www.w3.org/1999/02/22-rdf-syntax-ns#>
 +
PREFIX rdfs:    <http://www.w3.org/2000/01/rdf-schema#>
 +
PREFIX umls:    <http://mor.nlm.nih.gov/umls/>
 +
PREFIX meta:    <http://mor.nlm.nih.gov/umls/META_>
 +
PREFIX sn:      <http://mor.nlm.nih.gov/umls/SEMNET_>
 +
PREFIX pubmed:  <http://mor.nlm.nih.gov/bkr/PUBMED_>
 +
 +
select ?o1 ?o2 ?pmid2
 +
where { graph <http://data.nlm.nih.gov/bkr_instances_c2>{
 +
?s_inst_1 ?p_inst_1 ?o_inst_1 .
 +
?s_inst_1 rdf:type meta:C0543467 .
 +
?p_inst_1 rdfs:subPropertyOf sn:TREATS .
 +
?o_inst_1 rdf:type ?o1 .
 +
?s_inst_1 provenir:derives_from pubmed:10979521-INST .
 +
?p_inst_1 provenir:derives_from pubmed:10979521-INST .
 +
 +
?s_inst_2 ?p_inst_2 ?o_inst_2 .
 +
?s_inst_2 rdf:type ?o1 .
 +
?p_inst_2 rdfs:subPropertyOf sn:CAUSES .
 +
?o_inst_2 rdf:type ?o2 .
 +
?s_inst_2 provenir:derives_from ?pmid2 .
 +
?p_inst_2 provenir:derives_from ?pmid2 .
 +
}}
 +
;
 +
</pre>
 +
 +
==== Q2 - C3 ====
 +
<pre>
 +
sparql
 +
PREFIX bkr:      <http://mor.nlm.nih.gov/bkr/>
 +
PREFIX dc:      <http://purl.org/dc/elements/1.1/>
 +
PREFIX provenir: <http://knoesis.wright.edu/provenir/>
 +
PREFIX rdf:      <http://www.w3.org/1999/02/22-rdf-syntax-ns#>
 +
PREFIX rdfs:    <http://www.w3.org/2000/01/rdf-schema#>
 +
PREFIX umls:    <http://mor.nlm.nih.gov/umls/>
 +
PREFIX meta:    <http://mor.nlm.nih.gov/umls/META_>
 +
PREFIX sn:      <http://mor.nlm.nih.gov/umls/SEMNET_>
 +
PREFIX pubmed:  <http://mor.nlm.nih.gov/bkr/PUBMED_>
 +
 +
select ?o1 ?o2 ?pmid2
 +
where { graph <http://data.nlm.nih.gov/bkr_instances_c3>{
 +
?s_inst_1 ?p_inst_1 ?o_inst_1 .
 +
?s_inst_1 rdf:type meta:C0543467 .
 +
?p_inst_1 rdfs:subPropertyOf sn:TREATS .
 +
?o_inst_1 rdf:type ?o1 .
 +
?s_inst_1 provenir:derives_from pubmed:10979521-INST .
 +
?p_inst_1 provenir:derives_from pubmed:10979521-INST .
 +
?o_inst_1 provenir:derives_from pubmed:10979521-INST .
 +
 +
?s_inst_2 ?p_inst_2 ?o_inst_2 .
 +
?s_inst_2 rdf:type ?o1 .
 +
?p_inst_2 rdfs:subPropertyOf sn:CAUSES .
 +
?o_inst_2 rdf:type ?o2 .
 +
?s_inst_2 provenir:derives_from ?pmid2 .
 +
?p_inst_2 provenir:derives_from ?pmid2 .
 +
?o_inst_2 provenir:derives_from ?pmid2 .
 +
}}
 +
;
 +
</pre>
 +
 +
 +
=== Q3 ===
 +
 +
==== Q3 - SP ====
 +
<pre>
 +
sparql
 +
PREFIX bkr:      <http://mor.nlm.nih.gov/bkr/>
 +
PREFIX dc:      <http://purl.org/dc/elements/1.1/>
 +
PREFIX provenir: <http://knoesis.wright.edu/provenir/>
 +
PREFIX rdf:      <http://www.w3.org/1999/02/22-rdf-syntax-ns#>
 +
PREFIX rdfs:    <http://www.w3.org/2000/01/rdf-schema#>
 +
PREFIX umls:    <http://mor.nlm.nih.gov/umls/>
 +
PREFIX meta:    <http://mor.nlm.nih.gov/umls/META_>
 +
PREFIX sn:      <http://mor.nlm.nih.gov/umls/SEMNET_>
 +
PREFIX pubmed:  <http://mor.nlm.nih.gov/bkr/PUBMED_>
 +
 +
select ?o1 ?o2 ?pmid2 ?o3 ?pmid3
 +
where { graph <http://data.nlm.nih.gov/bkr_instances_sp>{
 +
meta:C0543467 ?sp1 ?o1 .
 +
?sp1 rdf:singletonPropertyOf sn:TREATS .
 +
?sp1 provenir:derives_from pubmed:10979521-INST .
 +
 +
?o1 ?sp2 ?o2 .
 +
?sp2 rdf:singletonPropertyOf sn:CAUSES .
 +
?sp2 provenir:derives_from ?pmid2 .
 +
 +
?o2 ?sp3 ?o3 .
 +
?sp3 rdf:singletonPropertyOf sn:AFFECTS .
 +
?sp3 provenir:derives_from ?pmid3 .
 +
}}
 +
;
 +
</pre>
 +
 +
==== Q3 - R ====
 +
<pre>
 +
sparql
 +
PREFIX bkr:      <http://mor.nlm.nih.gov/bkr/>
 +
PREFIX dc:      <http://purl.org/dc/elements/1.1/>
 +
PREFIX provenir: <http://knoesis.wright.edu/provenir/>
 +
PREFIX rdf:      <http://www.w3.org/1999/02/22-rdf-syntax-ns#>
 +
PREFIX rdfs:    <http://www.w3.org/2000/01/rdf-schema#>
 +
PREFIX umls:    <http://mor.nlm.nih.gov/umls/>
 +
PREFIX meta:    <http://mor.nlm.nih.gov/umls/META_>
 +
PREFIX sn:      <http://mor.nlm.nih.gov/umls/SEMNET_>
 +
PREFIX pubmed:  <http://mor.nlm.nih.gov/bkr/PUBMED_>
 +
PREFIX bkr_sn:  <http://mor.nlm.nih.gov/bkr/SEMNET_>
 +
PREFIX bkr_meta:  <http://mor.nlm.nih.gov/bkr/META_>
 +
 +
select ?o1 ?o2 ?pmid2 ?o3 ?pmid3
 +
where { graph <http://data.nlm.nih.gov/bkr_instances_r>{
 +
bkr_meta:C0543467-INST bkr_sn:TREATS ?o1 .
 +
?st1 rdf:type rdf:Statement .
 +
?st1 rdf:subject bkr_meta:C0543467-INST .
 +
?st1 rdf:predicate bkr_sn:TREATS .
 +
?st1 rdf:object ?o1 .
 +
?st1 provenir:derives_from pubmed:10979521-INST .
 +
 +
?o1 bkr_sn:CAUSES ?o2 .
 +
?st2 rdf:type rdf:Statement .
 +
?st2 rdf:subject ?o1 .
 +
?st2 rdf:predicate bkr_sn:CAUSES .
 +
?st2 rdf:object ?o2 .
 +
?st2 provenir:derives_from ?pmid2 .
 +
 +
?o2 bkr_sn:AFFECTS ?o3 .
 +
?st3 rdf:type rdf:Statement .
 +
?st3 rdf:subject ?o2 .
 +
?st3 rdf:predicate bkr_sn:AFFECTS .
 +
?st3 rdf:object ?o3 .
 +
?st3 provenir:derives_from ?pmid3 .
 +
}}
 +
;
 +
</pre>
 +
 +
==== Q3 - C1 ====
 +
<pre>
 +
sparql
 +
PREFIX bkr:      <http://mor.nlm.nih.gov/bkr/>
 +
PREFIX dc:      <http://purl.org/dc/elements/1.1/>
 +
PREFIX provenir: <http://knoesis.wright.edu/provenir/>
 +
PREFIX rdf:      <http://www.w3.org/1999/02/22-rdf-syntax-ns#>
 +
PREFIX rdfs:    <http://www.w3.org/2000/01/rdf-schema#>
 +
PREFIX umls:    <http://mor.nlm.nih.gov/umls/>
 +
PREFIX meta:    <http://mor.nlm.nih.gov/umls/META_>
 +
PREFIX sn:      <http://mor.nlm.nih.gov/umls/SEMNET_>
 +
PREFIX pubmed:  <http://mor.nlm.nih.gov/bkr/PUBMED_>
 +
 +
select ?o1 ?o2 ?pmid2 ?o3 ?pmid3
 +
where { graph <http://data.nlm.nih.gov/bkr_instances_c1>{
 +
?s_inst_1 ?p_inst_1 ?o_inst_1 .
 +
?s_inst_1 rdf:type meta:C0543467 .
 +
?p_inst_1 rdfs:subPropertyOf sn:TREATS .
 +
?o_inst_1 rdf:type ?o1 .
 +
?s_inst_1 provenir:derives_from pubmed:10979521-INST .
 +
 +
?s_inst_2 ?p_inst_2 ?o_inst_2 .
 +
?s_inst_2 rdf:type ?o1 .
 +
?p_inst_2 rdfs:subPropertyOf sn:CAUSES .
 +
?o_inst_2 rdf:type ?o2 .
 +
?s_inst_2 provenir:derives_from ?pmid2 .
 +
 +
?s_inst_3 ?p_inst_3 ?o_inst_3 .
 +
?s_inst_3 rdf:type ?o2 .
 +
?p_inst_3 rdfs:subPropertyOf sn:AFFECTS .
 +
?o_inst_3 rdf:type ?o3 .
 +
?s_inst_3 provenir:derives_from ?pmid3 .
 +
}}
 +
;
 +
</pre>
 +
 +
==== Q3 - C2 ====
 +
<pre>
 +
sparql
 +
PREFIX bkr:      <http://mor.nlm.nih.gov/bkr/>
 +
PREFIX dc:      <http://purl.org/dc/elements/1.1/>
 +
PREFIX provenir: <http://knoesis.wright.edu/provenir/>
 +
PREFIX rdf:      <http://www.w3.org/1999/02/22-rdf-syntax-ns#>
 +
PREFIX rdfs:    <http://www.w3.org/2000/01/rdf-schema#>
 +
PREFIX umls:    <http://mor.nlm.nih.gov/umls/>
 +
PREFIX meta:    <http://mor.nlm.nih.gov/umls/META_>
 +
PREFIX sn:      <http://mor.nlm.nih.gov/umls/SEMNET_>
 +
PREFIX pubmed:  <http://mor.nlm.nih.gov/bkr/PUBMED_>
 +
 +
select  ?o1 ?o2 ?pmid2 ?o3 ?pmid3
 +
where { graph <http://data.nlm.nih.gov/bkr_instances_c2>{
 +
?s_inst_1 ?p_inst_1 ?o_inst_1 .
 +
?s_inst_1 rdf:type meta:C0543467 .
 +
?p_inst_1 rdfs:subPropertyOf sn:TREATS .
 +
?o_inst_1 rdf:type ?o1 .
 +
?s_inst_1 provenir:derives_from pubmed:10979521-INST .
 +
?p_inst_1 provenir:derives_from pubmed:10979521-INST .
 +
 +
?s_inst_2 ?p_inst_2 ?o_inst_2 .
 +
?s_inst_2 rdf:type ?o1 .
 +
?p_inst_2 rdfs:subPropertyOf sn:CAUSES .
 +
?o_inst_2 rdf:type ?o2 .
 +
?s_inst_2 provenir:derives_from ?pmid2 .
 +
?p_inst_2 provenir:derives_from ?pmid2 .
 +
 +
?s_inst_3 ?p_inst_3 ?o_inst_3 .
 +
?s_inst_3 rdf:type ?o2 .
 +
?p_inst_3 rdfs:subPropertyOf sn:AFFECTS .
 +
?o_inst_3 rdf:type ?o3 .
 +
?s_inst_3 provenir:derives_from ?pmid3 .
 +
?p_inst_3 provenir:derives_from ?pmid3 .
 +
}}
 +
;
 +
</pre>
 +
 +
==== Q3 - C3 ====
 +
<pre>
 +
sparql
 +
PREFIX bkr:      <http://mor.nlm.nih.gov/bkr/>
 +
PREFIX dc:      <http://purl.org/dc/elements/1.1/>
 +
PREFIX provenir: <http://knoesis.wright.edu/provenir/>
 +
PREFIX rdf:      <http://www.w3.org/1999/02/22-rdf-syntax-ns#>
 +
PREFIX rdfs:    <http://www.w3.org/2000/01/rdf-schema#>
 +
PREFIX umls:    <http://mor.nlm.nih.gov/umls/>
 +
PREFIX meta:    <http://mor.nlm.nih.gov/umls/META_>
 +
PREFIX sn:      <http://mor.nlm.nih.gov/umls/SEMNET_>
 +
PREFIX pubmed:  <http://mor.nlm.nih.gov/bkr/PUBMED_>
 +
 +
select  ?o1 ?o2 ?pmid2 ?o3 ?pmid3
 +
where { graph <http://data.nlm.nih.gov/bkr_instances_c3>{
 +
?s_inst_1 ?p_inst_1 ?o_inst_1 .
 +
?s_inst_1 rdf:type meta:C0543467 .
 +
?p_inst_1 rdfs:subPropertyOf sn:TREATS .
 +
?o_inst_1 rdf:type ?o1 .
 +
?s_inst_1 provenir:derives_from pubmed:10979521-INST .
 +
?p_inst_1 provenir:derives_from pubmed:10979521-INST .
 +
?o_inst_1 provenir:derives_from pubmed:10979521-INST .
 +
 +
?s_inst_2 ?p_inst_2 ?o_inst_2 .
 +
?s_inst_2 rdf:type ?o1 .
 +
?p_inst_2 rdfs:subPropertyOf sn:CAUSES .
 +
?o_inst_2 rdf:type ?o2 .
 +
?s_inst_2 provenir:derives_from ?pmid2 .
 +
?p_inst_2 provenir:derives_from ?pmid2 .
 +
?o_inst_2 provenir:derives_from ?pmid2 .
 +
 +
?s_inst_3 ?p_inst_3 ?o_inst_3 .
 +
?s_inst_3 rdf:type ?o2 .
 +
?p_inst_3 rdfs:subPropertyOf sn:AFFECTS .
 +
?o_inst_3 rdf:type ?o3 .
 +
?s_inst_3 provenir:derives_from ?pmid3 .
 +
?p_inst_3 provenir:derives_from ?pmid3 .
 +
?o_inst_3 provenir:derives_from ?pmid3 .
 +
}}
 +
;
 +
</pre>
 +
 +
== OWL 2 Compatibility ==
 +
 +
<pre>
 +
<nowiki>
 +
@prefix : <http://nlm.nih.gov/mesh/> .
 +
@prefix rdf: <http://www.w3.org/1999/02/22-rdf-syntax-ns#> .
 +
@prefix owl: <http://www.w3.org/2002/07/owl#> .
 +
@prefix rdfs: <http://www.w3.org/2000/01/rdf-schema#> .
 +
 +
:Descriptor1 :co-occurs-1234 :Descriptor2 .
 +
:co-occurs-1234 :createdBy :Vinh .
 +
:co-occurs-1234 rdf:singletonPropertyOf  :co-occurs .
 +
rdf:singletonPropertyOf rdfs:subPropertyOf rdf:type .
 +
 +
:Descriptor rdf:type owl:Class .
 +
:User rdf:type owl:Class .
 +
:co-occurs rdf:type owl:Class .
 +
:co-occurs rdf:type owl:ObjectProperty .
 +
:createdBy rdf:type  owl:ObjectProperty .
 +
 +
:Descriptor1 rdf:type :Descriptor .
 +
:Descriptor2 rdf:type :Descriptor .
 +
:Vinh rdf:type  :User .
 +
 +
:co-occurs-1234 rdf:type owl:ObjectProperty .
 +
:co-occurs-1234 rdf:type  :co-occurs .
 +
</nowiki>
 +
</pre>

Latest revision as of 19:07, 3 June 2015

Singleton Property Resource Page

Singleton Property is a novel approach for making statements about statements in RDF without the use of RDF reification.

For the full paper of this approach, please refer to the WWW'14 paper at ACM


Projects Evaluating the Singleton Property

The singleton property approach has been evaluated at different teams. Here we list some of the projects that we are aware of.

Matvocab.org

Funded by the AFRL, this project is developing a collaborative framework, called MaterialsWay Wiki, for scientists to develop and integrate different vocabularies. The MaterialWays wiki is extended from MediaWiki to provide the annotation for the vocabulary terms.

The singleton property approach is adopted in the data model in order to represent the different definitions of the same term and their corresponding sources and licenses. The wiki is accessible at http://matvocab.org/wiki-dev/index.php/Main_Page The SPARQL endpoint of this project is accessible at http://matvocab.org/sparql

Bio Hackathon 2014

The singleton property approach has been discussed at the bio hackathon community [1]. As a candidate for modeling provenance about RDF assertion, it would be evaluated together with existing approaches in the task Standardization of RDF data and development of tools ontologies

PubChem RDF

The singleton property approach has been evaluated against other approaches at the PubChem team. A manuscript has been submitted to the ISWC evaluation track. The datasets created by the team are accessible at http://figshare.com/articles/Provenance_RDF_Models/1399197

Singleton Property Datasets

We implemented the Singleton Property approach in two datasets: BKR and YAGO2S.

BKR

The BKR datasets are implemented using five approaches: the singleton property (SP), the standard RDF reification (R) and three flavors C1, C2 and C3 of the PaCE.
BKR-SP
BKR-R
BKR-C1
BKR-C2
BKR-C3

YAGO2S-SP

We created the RDF-compliant version of YAGO2S using the singleton property approach. The file can be downloaded via yago2s-sp

Below is the complete set of generic properties and their singleton properties in the YAGO2S-SP. 

Generic property                               	                                       Number of singleton property instances
http://yago-knowledge.org/resource/extractionSource                               	32598374
http://www.w3.org/1999/02/22-rdf-syntax-ns#type                                  	9019948
http://www.w3.org/2000/01/rdf-schema#label                                        	4200036
http://yago-knowledge.org/resource/isPreferredMeaningOf                           	2886014
http://www.w3.org/2004/02/skos/core#prefLabel                                     	2886010
http://yago-knowledge.org/resource/isLocatedIn                                    	1262563
http://yago-knowledge.org/resource/hasGender                                      	923364
http://yago-knowledge.org/resource/hasFamilyName                                  	838669
http://yago-knowledge.org/resource/hasGivenName                                   	827681
http://yago-knowledge.org/resource/wasBornOnDate                                  	804816
http://yago-knowledge.org/resource/wasCreatedOnDate                               	713167
http://yago-knowledge.org/resource/occursSince                                    	553116
http://yago-knowledge.org/resource/isAffiliatedTo                                 	497263
http://yago-knowledge.org/resource/playsFor                                       	412388
http://yago-knowledge.org/resource/hasLongitude                                   	393717
http://yago-knowledge.org/resource/hasLatitude                                    	393250
http://www.w3.org/2000/01/rdf-schema#subClassOf                                   	382532
http://yago-knowledge.org/resource/diedOnDate                                   	361443
http://yago-knowledge.org/resource/occursUntil                                    	337116
http://yago-knowledge.org/resource/created                                       	278455
http://yago-knowledge.org/resource/hasNumberOfPeople                              	230745
http://yago-knowledge.org/resource/hasWebsite                                    	226393
http://yago-knowledge.org/resource/wasBornIn                                      	218757
http://yago-knowledge.org/resource/happenedOnDate                                	208894
http://yago-knowledge.org/resource/happenedIn                                    	194161
http://yago-knowledge.org/resource/hasArea                                        	129920
http://yago-knowledge.org/resource/actedIn                                       	127513
http://yago-knowledge.org/resource/hasWordnetDomain                              	87104
http://yago-knowledge.org/resource/hasWonPrize                                    	73763
http://yago-knowledge.org/resource/byTransport                                    	55871
http://yago-knowledge.org/resource/hasDuration                                   	54741
http://yago-knowledge.org/resource/diedIn                                         	54174
http://yago-knowledge.org/resource/hasHeight                                      	50863
http://yago-knowledge.org/resource/isCitizenOf                                    	46060
http://yago-knowledge.org/resource/wasDestroyedOnDate                             	42966
http://yago-knowledge.org/resource/directed                                       	41811
http://yago-knowledge.org/resource/hasPopulationDensity                           	39408
http://yago-knowledge.org/resource/isConnectedTo                                  	33834
http://yago-knowledge.org/resource/livesIn                                        	33628
http://yago-knowledge.org/resource/hasMusicalRole                                 	32681
http://yago-knowledge.org/resource/graduatedFrom                                  	30389
http://yago-knowledge.org/resource/hasMotto                                      	27643
http://yago-knowledge.org/resource/owns                                           	26551
http://yago-knowledge.org/resource/isMarriedTo                                    	26325
http://yago-knowledge.org/resource/influences                                    	26306
http://yago-knowledge.org/resource/wroteMusicFor                                 	24294
http://yago-knowledge.org/resource/hasWeight                                     	21256
http://yago-knowledge.org/resource/hasPredecessor                                	20574
http://yago-knowledge.org/resource/hasSuccessor                                  	18005
http://yago-knowledge.org/resource/hasChild                                      	17695
http://yago-knowledge.org/resource/participatedIn                                	16833
http://yago-knowledge.org/resource/hasPages                                      	15616
http://yago-knowledge.org/resource/hasISBN                                       	10917
http://yago-knowledge.org/resource/isLeaderOf                                    	10700
http://yago-knowledge.org/resource/hasLength                                     	9010
http://yago-knowledge.org/resource/holdsPoliticalPosition                        	6029
http://yago-knowledge.org/resource/edited                                        	5946
http://yago-knowledge.org/resource/hasAirportCode                                	5715
http://yago-knowledge.org/resource/worksAt                                       	5134
http://yago-knowledge.org/resource/hasRevenue                                    	4114
http://yago-knowledge.org/resource/isPoliticianOf                                	3752
http://yago-knowledge.org/resource/hasAcademicAdvisor                            	3340
http://yago-knowledge.org/resource/hasCapital                                    	1937
http://yago-knowledge.org/resource/hasOfficialLanguage                           	964
http://yago-knowledge.org/resource/dealsWith                                     	947
http://yago-knowledge.org/resource/hasBudget                                     	717
http://yago-knowledge.org/resource/hasCurrency                                   	667
http://yago-knowledge.org/resource/exports                                       	579
http://yago-knowledge.org/resource/isKnownFor                                    	500
http://yago-knowledge.org/resource/isInterestedIn                                	465
http://yago-knowledge.org/resource/imports                                        	391
http://yago-knowledge.org/resource/hasTLD                                       	270
http://yago-knowledge.org/resource/hasGDP                                        	241
http://yago-knowledge.org/resource/hasExport                                      	175
http://yago-knowledge.org/resource/hasExpenses                                    	174
http://yago-knowledge.org/resource/hasImport                                      	172
http://yago-knowledge.org/resource/hasInflation                                   	155
http://yago-knowledge.org/resource/hasUnemployment                               	145
http://yago-knowledge.org/resource/hasEconomicGrowth                              	141
http://yago-knowledge.org/resource/hasGini                                        	130
http://yago-knowledge.org/resource/hasPoverty                                     	84
http://yago-knowledge.org/resource/hasImdb                                        	9
http://yago-knowledge.org/resource/startedOnDate                                  	8

Query Set A

Four sets of queries for R, C1, C2, and C3 are obtained from ProvenanceContextEntity We created an equivalent set of queries for SP approach as the following.

Q1

# Query 1:
# ------------------------------------------------------------------
# 	All statements for a given PMID (e.g., 17209178)
# ------------------------------------------------------------------
PREFIX bkr:      <http://mor.nlm.nih.gov/bkr/>
PREFIX dc:       <http://purl.org/dc/elements/1.1/>
PREFIX provenir: <http://knoesis.wright.edu/provenir/>
PREFIX rdf:      <http://www.w3.org/1999/02/22-rdf-syntax-ns#>
PREFIX rdfs:     <http://www.w3.org/2000/01/rdf-schema#>
PREFIX umls:     <http://mor.nlm.nih.gov/umls/>
PREFIX meta:     <http://mor.nlm.nih.gov/umls/META_>
PREFIX sn:       <http://mor.nlm.nih.gov/umls/SEMNET_>
SELECT ?st_s_inst ?st_p_inst ?st_o_inst
FROM <http://mor.nlm.nih.gov/bkr_instances_sp>
WHERE {
	?st_s_inst ?st_p_inst ?st_o_inst .
	?st_p_inst provenir:derives_from bkr:PUBMED_99992-INST .		
}

Q2

# Query 2: C0012963|STIMULATES|C0598981|2006-12-01|2008-12-01
# ------------------------------------------------------------------
# 	All sources for a given statement
# 	(Lipoproteins  AFFECTS  Inflammatory cell)
# ------------------------------------------------------------------
PREFIX bkr:      <http://mor.nlm.nih.gov/bkr/>
PREFIX dc:       <http://purl.org/dc/elements/1.1/>
PREFIX provenir: <http://knoesis.wright.edu/provenir/>
PREFIX rdf:      <http://www.w3.org/1999/02/22-rdf-syntax-ns#>
PREFIX rdfs:     <http://www.w3.org/2000/01/rdf-schema#>
PREFIX umls:     <http://mor.nlm.nih.gov/umls/>
PREFIX meta:     <http://mor.nlm.nih.gov/umls/META_>
PREFIX sn:       <http://mor.nlm.nih.gov/umls/SEMNET_>
SELECT ?source_inst
FROM <http://mor.nlm.nih.gov/bkr_instances_sp>
WHERE {
	meta:C0012963 ?st_p_inst meta:C0598981 .
	?st_p_inst rdf:singletonPropertyOf sn:STIMULATES .
	?st_p_inst provenir:derives_from ?source_inst .		
}

Q3

# Query 3:
# ------------------------------------------------------------------
# 	Frequency by source for 1 statement
# ------------------------------------------------------------------
PREFIX bkr:      <http://mor.nlm.nih.gov/bkr/>
PREFIX dc:       <http://purl.org/dc/elements/1.1/>
PREFIX provenir: <http://knoesis.wright.edu/provenir/>
PREFIX rdf:      <http://www.w3.org/1999/02/22-rdf-syntax-ns#>
PREFIX rdfs:     <http://www.w3.org/2000/01/rdf-schema#>
PREFIX umls:     <http://mor.nlm.nih.gov/umls/>
PREFIX meta:     <http://mor.nlm.nih.gov/umls/META_>
PREFIX sn:       <http://mor.nlm.nih.gov/umls/SEMNET_>
SELECT ?source_name count(?source_name)
FROM <http://mor.nlm.nih.gov/bkr_instances_sp>
FROM <http://mor.nlm.nih.gov/bkr_schema>
WHERE {
	graph <http://mor.nlm.nih.gov/bkr_instances_sp> {
		meta:C0006307 ?st_p_inst ?o .
		?st_p_inst rdf:singletonPropertyOf sn:TREATS .
		?st_p_inst provenir:derives_from ?source_inst .
		?source_inst rdf:type ?source_cl .
	} .
	graph <http://mor.nlm.nih.gov/bkr_schema> {
		?source_cl rdfs:label ?source_name .
	} .
}

Q4

# Query 4:
# ------------------------------------------------------------------
# 	Time profiling for a given statement
# ------------------------------------------------------------------

PREFIX bkr:      <http://mor.nlm.nih.gov/bkr/>
PREFIX dc:       <http://purl.org/dc/elements/1.1/>
PREFIX provenir: <http://knoesis.wright.edu/provenir/>
PREFIX rdf:      <http://www.w3.org/1999/02/22-rdf-syntax-ns#>
PREFIX rdfs:     <http://www.w3.org/2000/01/rdf-schema#>
PREFIX umls:     <http://mor.nlm.nih.gov/umls/>
PREFIX meta:     <http://mor.nlm.nih.gov/umls/META_>
PREFIX sn:       <http://mor.nlm.nih.gov/umls/SEMNET_>
SELECT count(*)
FROM <http://mor.nlm.nih.gov/bkr_instances_sp>
FROM <http://mor.nlm.nih.gov/bkr_metadata>
WHERE {
	graph <http://mor.nlm.nih.gov/bkr_instances_sp> {
		meta:%s ?st_p_inst ?o .
		?st_p_inst rdf:singletonPropertyOf sn:%s . FILTER (?o = meta:%s) .
		?st_p_inst provenir:derives_from ?source_inst .
		?source_inst rdf:type ?source_cl .
	} .
	graph <http://mor.nlm.nih.gov/bkr_metadata> {
		?source_inst dc:date ?source_date .
		FILTER(?source_date >= xsd:date("%s") && ?source_date < xsd:date("%s"))
	}
}

Q5

# ------------------------------------------------------------------
# 	Time profiling for a given statement
# ------------------------------------------------------------------
# --Using functions

PREFIX bkr:      <http://mor.nlm.nih.gov/bkr/>
PREFIX dc:       <http://purl.org/dc/elements/1.1/>
PREFIX provenir: <http://knoesis.wright.edu/provenir/>
PREFIX rdf:      <http://www.w3.org/1999/02/22-rdf-syntax-ns#>
PREFIX rdfs:     <http://www.w3.org/2000/01/rdf-schema#>
PREFIX umls:     <http://mor.nlm.nih.gov/umls/>
PREFIX meta:     <http://mor.nlm.nih.gov/umls/META_>
PREFIX sn:       <http://mor.nlm.nih.gov/umls/SEMNET_>
SELECT ?year count(*)
FROM <http://mor.nlm.nih.gov/bkr_instances_sp>
FROM <http://mor.nlm.nih.gov/bkr_schema>
FROM <http://mor.nlm.nih.gov/bkr_metadata>
where {
    {
        select (bif:year(?source_date)) as ?year
        WHERE {
			graph <http://mor.nlm.nih.gov/bkr_instances_sp> {
				meta:%s ?st_p_inst ?o .
				?st_p_inst rdf:singletonPropertyOf sn:%s . FILTER(?o = meta:%s) .
				?st_p_inst provenir:derives_from ?source_inst .
				?source_inst rdf:type ?source_cl .
			} .
            graph <http://mor.nlm.nih.gov/bkr_metadata> {
                ?source_inst dc:date ?source_date .
            }
        }
    }
}
order by ?year

Query Set B

We created five equivalent sets of SPARQL queries for SP approach as the following.

Q1

Q1 - SP

sparql
PREFIX bkr:      <http://mor.nlm.nih.gov/bkr/>
PREFIX dc:       <http://purl.org/dc/elements/1.1/>
PREFIX provenir: <http://knoesis.wright.edu/provenir/>
PREFIX rdf:      <http://www.w3.org/1999/02/22-rdf-syntax-ns#>
PREFIX rdfs:     <http://www.w3.org/2000/01/rdf-schema#>
PREFIX umls:     <http://mor.nlm.nih.gov/umls/>
PREFIX meta:     <http://mor.nlm.nih.gov/umls/META_>
PREFIX sn:       <http://mor.nlm.nih.gov/umls/SEMNET_>
PREFIX pubmed:   <http://mor.nlm.nih.gov/bkr/PUBMED_>

select ?s ?p ?o 
where { graph <http://data.nlm.nih.gov/bkr_instances_sp>{
 ?s ?sp1 ?o .
 ?sp1 rdf:singletonPropertyOf ?p .
 ?sp1 provenir:derives_from pubmed:10979521-INST .
}}
;

Q1 - R

sparql
PREFIX bkr:      <http://mor.nlm.nih.gov/bkr/>
PREFIX dc:       <http://purl.org/dc/elements/1.1/>
PREFIX provenir: <http://knoesis.wright.edu/provenir/>
PREFIX rdf:      <http://www.w3.org/1999/02/22-rdf-syntax-ns#>
PREFIX rdfs:     <http://www.w3.org/2000/01/rdf-schema#>
PREFIX umls:     <http://mor.nlm.nih.gov/umls/>
PREFIX meta:     <http://mor.nlm.nih.gov/umls/META_>
PREFIX sn:       <http://mor.nlm.nih.gov/umls/SEMNET_>
PREFIX pubmed:   <http://mor.nlm.nih.gov/bkr/PUBMED_>
PREFIX bkr_sn:   <http://mor.nlm.nih.gov/bkr/SEMNET_>
PREFIX bkr_meta:   <http://mor.nlm.nih.gov/bkr/META_>

select ?s ?p ?o 
where { graph <http://data.nlm.nih.gov/bkr_instances_r>{
 ?s ?p ?o .
 ?st rdf:type rdf:Statement .
 ?st rdf:subject ?s .
 ?st rdf:predicate ?p .
 ?st rdf:object ?o .
 ?st provenir:derives_from pubmed:10979521-INST .
}}

Q1 - C1

sparql
PREFIX bkr:      <http://mor.nlm.nih.gov/bkr/>
PREFIX dc:       <http://purl.org/dc/elements/1.1/>
PREFIX provenir: <http://knoesis.wright.edu/provenir/>
PREFIX rdf:      <http://www.w3.org/1999/02/22-rdf-syntax-ns#>
PREFIX rdfs:     <http://www.w3.org/2000/01/rdf-schema#>
PREFIX umls:     <http://mor.nlm.nih.gov/umls/>
PREFIX meta:     <http://mor.nlm.nih.gov/umls/META_>
PREFIX sn:       <http://mor.nlm.nih.gov/umls/SEMNET_>
PREFIX pubmed:   <http://mor.nlm.nih.gov/bkr/PUBMED_>

select ?s ?p ?o 
where { graph <http://data.nlm.nih.gov/bkr_instances_c1>{
 ?s_inst ?p_inst ?o_inst .
 ?s_inst rdf:type ?s .
 ?p_inst rdfs:subPropertyOf ?p .
 ?o_inst rdf:type ?o .
 ?s_inst provenir:derives_from pubmed:10979521-INST . 
}}

Q1 - C2

</sparql
PREFIX bkr:      <http://mor.nlm.nih.gov/bkr/>
PREFIX dc:       <http://purl.org/dc/elements/1.1/>
PREFIX provenir: <http://knoesis.wright.edu/provenir/>
PREFIX rdf:      <http://www.w3.org/1999/02/22-rdf-syntax-ns#>
PREFIX rdfs:     <http://www.w3.org/2000/01/rdf-schema#>
PREFIX umls:     <http://mor.nlm.nih.gov/umls/>
PREFIX meta:     <http://mor.nlm.nih.gov/umls/META_>
PREFIX sn:       <http://mor.nlm.nih.gov/umls/SEMNET_>
PREFIX pubmed:   <http://mor.nlm.nih.gov/bkr/PUBMED_>

select ?s ?p ?o 
where { graph <http://data.nlm.nih.gov/bkr_instances_c2>{
 ?s_inst ?p_inst ?o_inst .
 ?s_inst rdf:type ?s .
 ?p_inst rdfs:subPropertyOf ?p .
 ?o_inst rdf:type ?o .
 ?s_inst provenir:derives_from pubmed:10979521-INST . 
 ?p_inst provenir:derives_from pubmed:10979521-INST . 
}}
;

Q1 - C3

sparql
PREFIX bkr:      <http://mor.nlm.nih.gov/bkr/>
PREFIX dc:       <http://purl.org/dc/elements/1.1/>
PREFIX provenir: <http://knoesis.wright.edu/provenir/>
PREFIX rdf:      <http://www.w3.org/1999/02/22-rdf-syntax-ns#>
PREFIX rdfs:     <http://www.w3.org/2000/01/rdf-schema#>
PREFIX umls:     <http://mor.nlm.nih.gov/umls/>
PREFIX meta:     <http://mor.nlm.nih.gov/umls/META_>
PREFIX sn:       <http://mor.nlm.nih.gov/umls/SEMNET_>
PREFIX pubmed:   <http://mor.nlm.nih.gov/bkr/PUBMED_>

select ?s ?p ?o 
where { graph <http://data.nlm.nih.gov/bkr_instances_c3>{
 ?s_inst ?p_inst ?o_inst .
 ?s_inst rdf:type ?s .
 ?p_inst rdfs:subPropertyOf ?p .
 ?o_inst rdf:type ?o .
 ?s_inst provenir:derives_from pubmed:10979521-INST . 
 ?p_inst provenir:derives_from pubmed:10979521-INST . 
 ?o_inst provenir:derives_from pubmed:10979521-INST . 
}}
;

Q2

Q2 - SP

sparql
PREFIX bkr:      <http://mor.nlm.nih.gov/bkr/>
PREFIX dc:       <http://purl.org/dc/elements/1.1/>
PREFIX provenir: <http://knoesis.wright.edu/provenir/>
PREFIX rdf:      <http://www.w3.org/1999/02/22-rdf-syntax-ns#>
PREFIX rdfs:     <http://www.w3.org/2000/01/rdf-schema#>
PREFIX umls:     <http://mor.nlm.nih.gov/umls/>
PREFIX meta:     <http://mor.nlm.nih.gov/umls/META_>
PREFIX sn:       <http://mor.nlm.nih.gov/umls/SEMNET_>
PREFIX pubmed:   <http://mor.nlm.nih.gov/bkr/PUBMED_>

select ?o1 ?o2 ?pmid2
where { graph <http://data.nlm.nih.gov/bkr_instances_sp>{
 meta:C0543467 ?sp1 ?o1 .
 ?sp1 rdf:singletonPropertyOf sn:TREATS .
 ?sp1 provenir:derives_from pubmed:10979521-INST .
 
 ?o1 ?sp2 ?o2 .
 ?sp2 rdf:singletonPropertyOf sn:CAUSES .
 ?sp2 provenir:derives_from ?pmid2 .
}}
;

Q2 - R

sparql
PREFIX bkr:      <http://mor.nlm.nih.gov/bkr/>
PREFIX dc:       <http://purl.org/dc/elements/1.1/>
PREFIX provenir: <http://knoesis.wright.edu/provenir/>
PREFIX rdf:      <http://www.w3.org/1999/02/22-rdf-syntax-ns#>
PREFIX rdfs:     <http://www.w3.org/2000/01/rdf-schema#>
PREFIX umls:     <http://mor.nlm.nih.gov/umls/>
PREFIX meta:     <http://mor.nlm.nih.gov/umls/META_>
PREFIX sn:       <http://mor.nlm.nih.gov/umls/SEMNET_>
PREFIX pubmed:   <http://mor.nlm.nih.gov/bkr/PUBMED_>
PREFIX bkr_sn:   <http://mor.nlm.nih.gov/bkr/SEMNET_>
PREFIX bkr_meta:   <http://mor.nlm.nih.gov/bkr/META_>

select ?o1 ?o2 ?pmid2
where { graph <http://data.nlm.nih.gov/bkr_instances_r>{
 bkr_meta:C0543467-INST bkr_sn:TREATS ?o1 . 
 ?st1 rdf:type rdf:Statement .
 ?st1 rdf:subject bkr_meta:C0543467-INST .
 ?st1 rdf:predicate bkr_sn:TREATS .
 ?st1 rdf:object ?o1 .
 ?st1 provenir:derives_from pubmed:10979521-INST .

 ?o1 bkr_sn:CAUSES ?o2 . 
 ?st2 rdf:type rdf:Statement .
 ?st2 rdf:subject ?o1 .
 ?st2 rdf:predicate bkr_sn:CAUSES .
 ?st2 rdf:object ?o2 .
 ?st2 provenir:derives_from ?pmid2 .
}}
;

Q2 - C1

sparql
PREFIX bkr:      <http://mor.nlm.nih.gov/bkr/>
PREFIX dc:       <http://purl.org/dc/elements/1.1/>
PREFIX provenir: <http://knoesis.wright.edu/provenir/>
PREFIX rdf:      <http://www.w3.org/1999/02/22-rdf-syntax-ns#>
PREFIX rdfs:     <http://www.w3.org/2000/01/rdf-schema#>
PREFIX umls:     <http://mor.nlm.nih.gov/umls/>
PREFIX meta:     <http://mor.nlm.nih.gov/umls/META_>
PREFIX sn:       <http://mor.nlm.nih.gov/umls/SEMNET_>
PREFIX pubmed:   <http://mor.nlm.nih.gov/bkr/PUBMED_>

select ?o1 ?o2 ?pmid2
where { graph <http://data.nlm.nih.gov/bkr_instances_c1>{
 ?s_inst_1 ?p_inst_1 ?o_inst_1 .
 ?s_inst_1 rdf:type meta:C0543467 .
 ?p_inst_1 rdfs:subPropertyOf sn:TREATS .
 ?o_inst_1 rdf:type ?o1 .
 ?s_inst_1 provenir:derives_from pubmed:10979521-INST . 
 
 ?s_inst_2 ?p_inst_2 ?o_inst_2 .
 ?s_inst_2 rdf:type ?o1 .
 ?p_inst_2 rdfs:subPropertyOf sn:CAUSES .
 ?o_inst_2 rdf:type ?o2 .
 ?s_inst_2 provenir:derives_from ?pmid2 . 
}}
;

Q2 - C2

sparql
PREFIX bkr:      <http://mor.nlm.nih.gov/bkr/>
PREFIX dc:       <http://purl.org/dc/elements/1.1/>
PREFIX provenir: <http://knoesis.wright.edu/provenir/>
PREFIX rdf:      <http://www.w3.org/1999/02/22-rdf-syntax-ns#>
PREFIX rdfs:     <http://www.w3.org/2000/01/rdf-schema#>
PREFIX umls:     <http://mor.nlm.nih.gov/umls/>
PREFIX meta:     <http://mor.nlm.nih.gov/umls/META_>
PREFIX sn:       <http://mor.nlm.nih.gov/umls/SEMNET_>
PREFIX pubmed:   <http://mor.nlm.nih.gov/bkr/PUBMED_>

select ?o1 ?o2 ?pmid2
where { graph <http://data.nlm.nih.gov/bkr_instances_c2>{
 ?s_inst_1 ?p_inst_1 ?o_inst_1 .
 ?s_inst_1 rdf:type meta:C0543467 .
 ?p_inst_1 rdfs:subPropertyOf sn:TREATS .
 ?o_inst_1 rdf:type ?o1 .
 ?s_inst_1 provenir:derives_from pubmed:10979521-INST . 
 ?p_inst_1 provenir:derives_from pubmed:10979521-INST . 

 ?s_inst_2 ?p_inst_2 ?o_inst_2 .
 ?s_inst_2 rdf:type ?o1 .
 ?p_inst_2 rdfs:subPropertyOf sn:CAUSES .
 ?o_inst_2 rdf:type ?o2 .
 ?s_inst_2 provenir:derives_from ?pmid2 . 
 ?p_inst_2 provenir:derives_from ?pmid2 . 
}}
;

Q2 - C3

sparql
PREFIX bkr:      <http://mor.nlm.nih.gov/bkr/>
PREFIX dc:       <http://purl.org/dc/elements/1.1/>
PREFIX provenir: <http://knoesis.wright.edu/provenir/>
PREFIX rdf:      <http://www.w3.org/1999/02/22-rdf-syntax-ns#>
PREFIX rdfs:     <http://www.w3.org/2000/01/rdf-schema#>
PREFIX umls:     <http://mor.nlm.nih.gov/umls/>
PREFIX meta:     <http://mor.nlm.nih.gov/umls/META_>
PREFIX sn:       <http://mor.nlm.nih.gov/umls/SEMNET_>
PREFIX pubmed:   <http://mor.nlm.nih.gov/bkr/PUBMED_>

select ?o1 ?o2 ?pmid2
where { graph <http://data.nlm.nih.gov/bkr_instances_c3>{
 ?s_inst_1 ?p_inst_1 ?o_inst_1 .
 ?s_inst_1 rdf:type meta:C0543467 .
 ?p_inst_1 rdfs:subPropertyOf sn:TREATS .
 ?o_inst_1 rdf:type ?o1 .
 ?s_inst_1 provenir:derives_from pubmed:10979521-INST . 
 ?p_inst_1 provenir:derives_from pubmed:10979521-INST . 
 ?o_inst_1 provenir:derives_from pubmed:10979521-INST . 

 ?s_inst_2 ?p_inst_2 ?o_inst_2 .
 ?s_inst_2 rdf:type ?o1 .
 ?p_inst_2 rdfs:subPropertyOf sn:CAUSES .
 ?o_inst_2 rdf:type ?o2 .
 ?s_inst_2 provenir:derives_from ?pmid2 . 
 ?p_inst_2 provenir:derives_from ?pmid2 . 
 ?o_inst_2 provenir:derives_from ?pmid2 . 
}}
;


Q3

Q3 - SP

sparql
PREFIX bkr:      <http://mor.nlm.nih.gov/bkr/>
PREFIX dc:       <http://purl.org/dc/elements/1.1/>
PREFIX provenir: <http://knoesis.wright.edu/provenir/>
PREFIX rdf:      <http://www.w3.org/1999/02/22-rdf-syntax-ns#>
PREFIX rdfs:     <http://www.w3.org/2000/01/rdf-schema#>
PREFIX umls:     <http://mor.nlm.nih.gov/umls/>
PREFIX meta:     <http://mor.nlm.nih.gov/umls/META_>
PREFIX sn:       <http://mor.nlm.nih.gov/umls/SEMNET_>
PREFIX pubmed:   <http://mor.nlm.nih.gov/bkr/PUBMED_>

select ?o1 ?o2 ?pmid2 ?o3 ?pmid3
where { graph <http://data.nlm.nih.gov/bkr_instances_sp>{
 meta:C0543467 ?sp1 ?o1 .
 ?sp1 rdf:singletonPropertyOf sn:TREATS .
 ?sp1 provenir:derives_from pubmed:10979521-INST .
 
 ?o1 ?sp2 ?o2 .
 ?sp2 rdf:singletonPropertyOf sn:CAUSES .
 ?sp2 provenir:derives_from ?pmid2 .
 
 ?o2 ?sp3 ?o3 .
 ?sp3 rdf:singletonPropertyOf sn:AFFECTS .
 ?sp3 provenir:derives_from ?pmid3 .
}}
;

Q3 - R

sparql
PREFIX bkr:      <http://mor.nlm.nih.gov/bkr/>
PREFIX dc:       <http://purl.org/dc/elements/1.1/>
PREFIX provenir: <http://knoesis.wright.edu/provenir/>
PREFIX rdf:      <http://www.w3.org/1999/02/22-rdf-syntax-ns#>
PREFIX rdfs:     <http://www.w3.org/2000/01/rdf-schema#>
PREFIX umls:     <http://mor.nlm.nih.gov/umls/>
PREFIX meta:     <http://mor.nlm.nih.gov/umls/META_>
PREFIX sn:       <http://mor.nlm.nih.gov/umls/SEMNET_>
PREFIX pubmed:   <http://mor.nlm.nih.gov/bkr/PUBMED_>
PREFIX bkr_sn:   <http://mor.nlm.nih.gov/bkr/SEMNET_>
PREFIX bkr_meta:   <http://mor.nlm.nih.gov/bkr/META_>

select ?o1 ?o2 ?pmid2 ?o3 ?pmid3
where { graph <http://data.nlm.nih.gov/bkr_instances_r>{
 bkr_meta:C0543467-INST bkr_sn:TREATS ?o1 . 
 ?st1 rdf:type rdf:Statement .
 ?st1 rdf:subject bkr_meta:C0543467-INST .
 ?st1 rdf:predicate bkr_sn:TREATS .
 ?st1 rdf:object ?o1 .
 ?st1 provenir:derives_from pubmed:10979521-INST .
 
 ?o1 bkr_sn:CAUSES ?o2 . 
 ?st2 rdf:type rdf:Statement .
 ?st2 rdf:subject ?o1 .
 ?st2 rdf:predicate bkr_sn:CAUSES .
 ?st2 rdf:object ?o2 .
 ?st2 provenir:derives_from ?pmid2 .
 
 ?o2 bkr_sn:AFFECTS ?o3 . 
 ?st3 rdf:type rdf:Statement .
 ?st3 rdf:subject ?o2 .
 ?st3 rdf:predicate bkr_sn:AFFECTS .
 ?st3 rdf:object ?o3 .
 ?st3 provenir:derives_from ?pmid3 .
}}
;

Q3 - C1

sparql
PREFIX bkr:      <http://mor.nlm.nih.gov/bkr/>
PREFIX dc:       <http://purl.org/dc/elements/1.1/>
PREFIX provenir: <http://knoesis.wright.edu/provenir/>
PREFIX rdf:      <http://www.w3.org/1999/02/22-rdf-syntax-ns#>
PREFIX rdfs:     <http://www.w3.org/2000/01/rdf-schema#>
PREFIX umls:     <http://mor.nlm.nih.gov/umls/>
PREFIX meta:     <http://mor.nlm.nih.gov/umls/META_>
PREFIX sn:       <http://mor.nlm.nih.gov/umls/SEMNET_>
PREFIX pubmed:   <http://mor.nlm.nih.gov/bkr/PUBMED_>

select ?o1 ?o2 ?pmid2 ?o3 ?pmid3
where { graph <http://data.nlm.nih.gov/bkr_instances_c1>{
 ?s_inst_1 ?p_inst_1 ?o_inst_1 .
 ?s_inst_1 rdf:type meta:C0543467 .
 ?p_inst_1 rdfs:subPropertyOf sn:TREATS .
 ?o_inst_1 rdf:type ?o1 .
 ?s_inst_1 provenir:derives_from pubmed:10979521-INST . 
 
 ?s_inst_2 ?p_inst_2 ?o_inst_2 .
 ?s_inst_2 rdf:type ?o1 .
 ?p_inst_2 rdfs:subPropertyOf sn:CAUSES .
 ?o_inst_2 rdf:type ?o2 .
 ?s_inst_2 provenir:derives_from ?pmid2 . 
 
 ?s_inst_3 ?p_inst_3 ?o_inst_3 .
 ?s_inst_3 rdf:type ?o2 .
 ?p_inst_3 rdfs:subPropertyOf sn:AFFECTS .
 ?o_inst_3 rdf:type ?o3 .
 ?s_inst_3 provenir:derives_from ?pmid3 . 
}}
;

Q3 - C2

sparql
PREFIX bkr:      <http://mor.nlm.nih.gov/bkr/>
PREFIX dc:       <http://purl.org/dc/elements/1.1/>
PREFIX provenir: <http://knoesis.wright.edu/provenir/>
PREFIX rdf:      <http://www.w3.org/1999/02/22-rdf-syntax-ns#>
PREFIX rdfs:     <http://www.w3.org/2000/01/rdf-schema#>
PREFIX umls:     <http://mor.nlm.nih.gov/umls/>
PREFIX meta:     <http://mor.nlm.nih.gov/umls/META_>
PREFIX sn:       <http://mor.nlm.nih.gov/umls/SEMNET_>
PREFIX pubmed:   <http://mor.nlm.nih.gov/bkr/PUBMED_>

select  ?o1 ?o2 ?pmid2 ?o3 ?pmid3
where { graph <http://data.nlm.nih.gov/bkr_instances_c2>{
 ?s_inst_1 ?p_inst_1 ?o_inst_1 .
 ?s_inst_1 rdf:type meta:C0543467 .
 ?p_inst_1 rdfs:subPropertyOf sn:TREATS .
 ?o_inst_1 rdf:type ?o1 .
 ?s_inst_1 provenir:derives_from pubmed:10979521-INST . 
 ?p_inst_1 provenir:derives_from pubmed:10979521-INST . 

 ?s_inst_2 ?p_inst_2 ?o_inst_2 .
 ?s_inst_2 rdf:type ?o1 .
 ?p_inst_2 rdfs:subPropertyOf sn:CAUSES .
 ?o_inst_2 rdf:type ?o2 .
 ?s_inst_2 provenir:derives_from ?pmid2 . 
 ?p_inst_2 provenir:derives_from ?pmid2 . 

 ?s_inst_3 ?p_inst_3 ?o_inst_3 .
 ?s_inst_3 rdf:type ?o2 .
 ?p_inst_3 rdfs:subPropertyOf sn:AFFECTS .
 ?o_inst_3 rdf:type ?o3 .
 ?s_inst_3 provenir:derives_from ?pmid3 . 
 ?p_inst_3 provenir:derives_from ?pmid3 . 
}}
;

Q3 - C3

sparql
PREFIX bkr:      <http://mor.nlm.nih.gov/bkr/>
PREFIX dc:       <http://purl.org/dc/elements/1.1/>
PREFIX provenir: <http://knoesis.wright.edu/provenir/>
PREFIX rdf:      <http://www.w3.org/1999/02/22-rdf-syntax-ns#>
PREFIX rdfs:     <http://www.w3.org/2000/01/rdf-schema#>
PREFIX umls:     <http://mor.nlm.nih.gov/umls/>
PREFIX meta:     <http://mor.nlm.nih.gov/umls/META_>
PREFIX sn:       <http://mor.nlm.nih.gov/umls/SEMNET_>
PREFIX pubmed:   <http://mor.nlm.nih.gov/bkr/PUBMED_>

select  ?o1 ?o2 ?pmid2 ?o3 ?pmid3
where { graph <http://data.nlm.nih.gov/bkr_instances_c3>{
 ?s_inst_1 ?p_inst_1 ?o_inst_1 .
 ?s_inst_1 rdf:type meta:C0543467 .
 ?p_inst_1 rdfs:subPropertyOf sn:TREATS .
 ?o_inst_1 rdf:type ?o1 .
 ?s_inst_1 provenir:derives_from pubmed:10979521-INST . 
 ?p_inst_1 provenir:derives_from pubmed:10979521-INST . 
 ?o_inst_1 provenir:derives_from pubmed:10979521-INST . 

 ?s_inst_2 ?p_inst_2 ?o_inst_2 .
 ?s_inst_2 rdf:type ?o1 .
 ?p_inst_2 rdfs:subPropertyOf sn:CAUSES .
 ?o_inst_2 rdf:type ?o2 .
 ?s_inst_2 provenir:derives_from ?pmid2 . 
 ?p_inst_2 provenir:derives_from ?pmid2 . 
 ?o_inst_2 provenir:derives_from ?pmid2 . 

 ?s_inst_3 ?p_inst_3 ?o_inst_3 .
 ?s_inst_3 rdf:type ?o2 .
 ?p_inst_3 rdfs:subPropertyOf sn:AFFECTS .
 ?o_inst_3 rdf:type ?o3 .
 ?s_inst_3 provenir:derives_from ?pmid3 . 
 ?p_inst_3 provenir:derives_from ?pmid3 . 
 ?o_inst_3 provenir:derives_from ?pmid3 . 
}}
;

OWL 2 Compatibility

@prefix : <http://nlm.nih.gov/mesh/> . 
@prefix rdf: <http://www.w3.org/1999/02/22-rdf-syntax-ns#> . 
@prefix owl: <http://www.w3.org/2002/07/owl#> . 
@prefix rdfs: <http://www.w3.org/2000/01/rdf-schema#> . 

:Descriptor1 :co-occurs-1234 :Descriptor2 . 
:co-occurs-1234 :createdBy :Vinh . 
:co-occurs-1234 rdf:singletonPropertyOf  :co-occurs . 
rdf:singletonPropertyOf rdfs:subPropertyOf rdf:type . 
 
:Descriptor rdf:type owl:Class . 
:User rdf:type owl:Class . 
:co-occurs rdf:type owl:Class . 
:co-occurs rdf:type owl:ObjectProperty . 
:createdBy rdf:type  owl:ObjectProperty . 

:Descriptor1 rdf:type :Descriptor . 
:Descriptor2 rdf:type :Descriptor . 
:Vinh rdf:type  :User . 

:co-occurs-1234 rdf:type owl:ObjectProperty . 
:co-occurs-1234 rdf:type  :co-occurs .
Retrieved from "https://wiki.aiisc.ai/index.php?title=Singleton_Property&oldid=8715"