Difference between revisions of "Manuscript Details"

Revision as of 14:15, 9 June 2011

Query 1

• SPARQL Query:
• Cuebee Query
  • Query 1 in Cuebee

Query 2

SPARQL Query:

PREFIX BASE: <http://knoesis.wright.edu/ParasiteExperiment.owl#>
PREFIX PATHWAY: <http://purl.org/obo/owlapi/pathway#>
PREFIX rdf: <http://www.w3.org/1999/02/22-rdf-syntax-ns#>
PREFIX rdfs: <http://www.w3.org/2000/01/rdf-schema#>
PREFIX so: <http://purl.org/obo/owl/sequence#>
PREFIX owl: <http://www.w3.org/2002/07/owl#>
PREFIX NCI: <http://ncicb.nci.nih.gov/xml/owl/EVS/Thesaurus.owl#>

SELECT ?gene ?microarray ?pathwaylabel ?logbasevalue ?entry ?pathway
FROM <http://knoesis.wright.edu/tcruzi4>
WHERE { GRAPH <http://knoesis.wright.edu/tcruzi4>
{
?microarray BASE:has_output_value ?gene .
?microarray BASE:has_output_value ?logbase .
?microarray rdf:type NCI:Microarray_Analysis .
?logbase rdf:type BASE:log_base2_ratio .
?logbase BASE:has_value ?logbasevalue .
?gene rdf:type so:gene .
?entry owl:sameAs ?gene .
?entry rdf:type so:gene .
?entry BASE:involved_in ?pathway .
?pathway rdf:type BASE:pathway .
?pathway rdfs:label ?pathwaylabel
FILTER regex(?microarray , "epimastigote") .
FILTER (?logbasevalue < -1) .
{
	SELECT  ?gene count(?pathway)
	FROM <http://knoesis.wright.edu/tcruzi4>
	WHERE { GRAPH <http://knoesis.wright.edu/tcruzi4>
	{
	?microarray BASE:has_output_value ?gene .
           ?microarray rdf:type NCI:Microarray_Analysis .
	?gene rdf:type so:gene .
	?entry owl:sameAs ?gene .
	?entry rdf:type so:gene .
	?entry BASE:involved_in ?pathway .
	?pathway rdf:type BASE:pathway .
	?pathway rdfs:label ?pathwaylabel
	FILTER regex(?microarray , "epimastigote") .
	}
	}
	group by ?gene
	having count(?pathway) = 1
	}
}
}

Cuebee Query

• • Query 2 in Cuebee

Query 3

• SPARQL Query:
• Cuebee Query
  • Query 3 in Cuebee