OntoCAT - Revision history

Matthan at 15:08, 28 July 2011

2011-07-28T15:08:39Z

Matthan at 15:08, 28 July 2011

2011-07-28T15:08:11Z

Matthan at 15:07, 28 July 2011

2011-07-28T15:07:46Z

Matthan at 15:07, 28 July 2011

2011-07-28T15:07:07Z

Matthan at 14:55, 28 July 2011

2011-07-28T14:55:51Z

Matthan at 14:51, 28 July 2011

2011-07-28T14:51:18Z

Matthan at 14:50, 28 July 2011

2011-07-28T14:50:08Z

Matthan at 14:43, 28 July 2011

2011-07-28T14:43:11Z

Matthan at 14:01, 28 July 2011

2011-07-28T14:01:22Z

Matthan: Created page with "NOTOC {| style="width:100%; vertical-align:top;" | style="width:60%; border:1px solid #cef2e0; background:#cef2e0; vertical-align:top; color:#000;" | {| style="width:100%; v..."

2011-07-28T13:46:14Z

Created page with "__NOTOC__ {| style="width:100%; vertical-align:top;" | style="width:60%; border:1px solid #cef2e0; background:#cef2e0; vertical-align:top; color:#000;" | {| style="width:100%; v..."

New page

__NOTOC__
{| style="width:100%; vertical-align:top;"
| style="width:60%; border:1px solid #cef2e0; background:#cef2e0; vertical-align:top; color:#000;" |
{| style="width:100%; vertical-align:top;"

{{block
|title=What is OntoCAT?
|title_background=#b0e2ff
|content=
OntoCAT is a web application that allows users to create forms, and input data into those forms, based on a given ontology.
}}

@@ Line 28: / Line 28: @@
    |title_background=#ffffcc
    |content=
-===GENE FORMS===
+==GENE FORMS==
 ====New Data====
 . Go to "http://knoesis1.wright.edu/TarletonFormManager/GeneKOForm.html" <br />
@@ Line 48: / Line 48: @@
-===STRAIN FORMS===
+==STRAIN FORMS==
 ====New Data====
 . Go to "http://knoesis1.wright.edu/TarletonFormManager/StrainForm.jsp" <br />

@@ Line 40: / Line 40: @@
 (The browser will redirect to "http://knoesis1.wright.edu/TarletonFormManager/DisplayPage.jsp") <br /><br />
 . If the entered data is not correct, click "Edit Knock-Out Details" at the bottom of the page to edit the information
 ====Edit Data====
@@ Line 45: / Line 46: @@
 . Click on the desired KO ID to edit <br />
 . Edit information, and submit (Note: This process will be like entering new data, except all the fields will be populated with the existing data) <br />
 ===STRAIN FORMS===

@@ Line 34: / Line 34: @@
 . Click a field's corresponding help button to have the field explained (Note: "Date Completed" and "Date Started" are for future editing, and are not accessable at the time of data entry) <br />
 . Click "Enter Knock-Out Content" <br />
-(The browser will redirect to "http://knoesis1.wright.edu/TarletonFormManager/AlleleKOForm.jsp") <br />
+(The browser will redirect to "http://knoesis1.wright.edu/TarletonFormManager/AlleleKOForm.jsp") <br /><br />
 . Fill information out on both tabs (Note: The second "Gene ID" field is there for implementation of future features, it is currently locked) <br />
 . Click "Add Allele Entry" to save the data for that allele (Note: If more than one allele exists for a given gene, repeat steps 5 and 6 until all allele information is entered) <br />
 . Click "Done adding Allele's" to save all the information <br />
-(The browser will redirect to "http://knoesis1.wright.edu/TarletonFormManager/DisplayPage.jsp") <br />
+(The browser will redirect to "http://knoesis1.wright.edu/TarletonFormManager/DisplayPage.jsp") <br /><br />
 . If the entered data is not correct, click "Edit Knock-Out Details" at the bottom of the page to edit the information
@@ Line 51: / Line 51: @@
 . Input information <br />
 . Click "Submit Strain Entry" <br />
-(The browser will redirect to"http://knoesis1.wright.edu/TarletonFormManager/StrainCloneForm.html") <br />
+(The browser will redirect to"http://knoesis1.wright.edu/TarletonFormManager/StrainCloneForm.html") <br /><br />
 . Input information <br />
 . Click "Submit Clone Entry" (Note: If inserting multiple clones, repeate steps 4 and 5 until all desired information is submitted)  <br />
 . Click "Go to Plasmid Form"  <br />
-(The browser will redirect to "http://knoesis1.wright.edu/TarletonFormManager/StrainPlasmidForm.jsp") <br />
+(The browser will redirect to "http://knoesis1.wright.edu/TarletonFormManager/StrainPlasmidForm.jsp") <br /><br />
 . If there is a KO Plasmid to submit, select it and click "Submit Plasmid Entry" <br />
 . Cick "Select Clone Designate" <br />
-(The browser will redirect to "http://knoesis1.wright.edu/TarletonFormManager/CloneDesignate.jsp") <br />
+(The browser will redirect to "http://knoesis1.wright.edu/TarletonFormManager/CloneDesignate.jsp") <br /><br />
 . Select desired clone, and click "Enter Designated Clone" <br />
-(The browser will redirect to "http://knoesis1.wright.edu/TarletonFormManager/StrainDisplayPage.jsp") <br />
+(The browser will redirect to "http://knoesis1.wright.edu/TarletonFormManager/StrainDisplayPage.jsp") <br /><br />
 . If there is any incorrect information pertaining to the selected clone, click "Edit Strain Details" <br />
@@ Line 68: / Line 68: @@
 . Click on the desired Strain ID to edit. <br />
 . Edit the information, and submit <br />
-(The browser will redirect to "http://knoesis1.wright.edu/TarletonFormManager/StrainDisplayPage.jsp") <br />
+(The browser will redirect to "http://knoesis1.wright.edu/TarletonFormManager/StrainDisplayPage.jsp") <br /><br />
 . Click "Edit Strain Details" to change the desired information (Note: This process will be like entering new data, except all the fields will be populated with the existing data)
 }}
 }}

@@ Line 28: / Line 28: @@
    |title_background=#ffffcc
    |content=
-<poem>
+===GENE FORMS===
-GENE FORMS
+====New Data====
--------New Data-------
+. Go to "http://knoesis1.wright.edu/TarletonFormManager/GeneKOForm.html" <br />
-. Go to "http://knoesis1.wright.edu/TarletonFormManager/GeneKOForm.html"
+. Fill information out on both tabs <br />
-. Fill information out on both tabs
+. Click a field's corresponding help button to have the field explained (Note: "Date Completed" and "Date Started" are for future editing, and are not accessable at the time of data entry) <br />
-. Click a field's corresponding help button to have the field explained
+. Click "Enter Knock-Out Content" <br />
-	+Note: "Date Completed" and "Date Started" are for future editing, and are not accessable at the time of data entry
+(The browser will redirect to "http://knoesis1.wright.edu/TarletonFormManager/AlleleKOForm.jsp") <br />
-. Click "Enter Knock-Out Content"
+. Fill information out on both tabs (Note: The second "Gene ID" field is there for implementation of future features, it is currently locked) <br />
+. Click "Add Allele Entry" to save the data for that allele (Note: If more than one allele exists for a given gene, repeat steps 5 and 6 until all allele information is entered) <br />
-(The browser will redirect to "http://knoesis1.wright.edu/TarletonFormManager/AlleleKOForm.jsp")
+. Click "Done adding Allele's" to save all the information <br />
-. Fill information out on both tabs
+(The browser will redirect to "http://knoesis1.wright.edu/TarletonFormManager/DisplayPage.jsp") <br />
-	+Note: The second "Gene ID" field is there for implementation of future features, it is currently locked
 . Click "Add Allele Entry" to save the data for that allele
-	+Note: If more than one allele exists for a given gene, repeat steps 5 and 6 until all allele information is entered
 . Click "Done adding Allele's" to save all the information
-−
 (The browser will redirect to "http://knoesis1.wright.edu/TarletonFormManager/DisplayPage.jsp")
 . If the entered data is not correct, click "Edit Knock-Out Details" at the bottom of the page to edit the information
--------Edit Data-------
+===STRAIN FORMS===
-. Go to "http://knoesis1.wright.edu/TarletonFormManager/GeneInfo.jsp"
+====New Data====
-. Click on the desired KO ID to edit
+. Go to "http://knoesis1.wright.edu/TarletonFormManager/StrainForm.jsp" <br />
-. Edit information, and submit
+. Input information <br />
-	+Note: This process will be like entering new data, except all the fields will be populated with the existing data
+. Click "Submit Strain Entry" <br />
+(The browser will redirect to"http://knoesis1.wright.edu/TarletonFormManager/StrainCloneForm.html") <br />
+. Input information <br />
+. Click "Submit Clone Entry" (Note: If inserting multiple clones, repeate steps 4 and 5 until all desired information is submitted)  <br />
+. Click "Go to Plasmid Form"  <br />
-STRAIN FORMS
+(The browser will redirect to "http://knoesis1.wright.edu/TarletonFormManager/StrainPlasmidForm.jsp") <br />
--------New Data-------
+. If there is a KO Plasmid to submit, select it and click "Submit Plasmid Entry" <br />
-. Go to "http://knoesis1.wright.edu/TarletonFormManager/StrainForm.jsp"
+. Cick "Select Clone Designate" <br />
-. Input information
+(The browser will redirect to "http://knoesis1.wright.edu/TarletonFormManager/CloneDesignate.jsp") <br />
-. Click "Submit Strain Entry"
+. Select desired clone, and click "Enter Designated Clone" <br />
+(The browser will redirect to "http://knoesis1.wright.edu/TarletonFormManager/StrainDisplayPage.jsp") <br />
-(The browser will redirect to"http://knoesis1.wright.edu/TarletonFormManager/StrainCloneForm.html")
+. If there is any incorrect information pertaining to the selected clone, click "Edit Strain Details" <br />
 . Input information
 . Click "Submit Clone Entry"
-	+Note: If inserting multiple clones, repeate steps 4 and 5 until all desired information is submitted
-. Click "Go to P
-lasmid Form"
-−
 (The browser will redirect to "http://knoesis1.wright.edu/TarletonFormManager/StrainPlasmidForm.jsp")
 . If there is a KO Plasmid to submit, select it and click "Submit Plasmid Entry"
 . Cick "Select Clone Designate"
-−
 (The browser will redirect to "http://knoesis1.wright.edu/TarletonFormManager/CloneDesignate.jsp")
 . Select desired clone, and click "Enter Designated Clone"
-−
 (The browser will redirect to "http://knoesis1.wright.edu/TarletonFormManager/StrainDisplayPage.jsp")
 . If there is any incorrect information pertaining to the selected clone, click "Edit Strain Details"
-−
-(The browser will redirect to "http://knoesis1.wright.edu/TarletonFormManager/StrainDisplayPage.jsp")
+====Edit Data====
-. Click "Edit Strain Details" to change the desired information
+. Go to "http://knoesis1.wright.edu/TarletonFormManager/StrainInfo.jsp" <br />
-	++Note: This process will be like entering new data, except all the fields will be populated with the existing data
+. Click on the desired Strain ID to edit. <br />
-</poem>
+. Edit the information, and submit <br />
 }}
 }}

@@ Line 28: / Line 28: @@
    |title_background=#ffffcc
    |content=
 GENE FORMS
 -------New Data-------
-. Go to "http://knoesis1.wright.edu/TarletonFormManager/GeneKOForm.html" \n
+. Go to "http://knoesis1.wright.edu/TarletonFormManager/GeneKOForm.html"
-. Fill information out on both tabs \n
+. Fill information out on both tabs
 . Click a field's corresponding help button to have the field explained
 	+Note: "Date Completed" and "Date Started" are for future editing, and are not accessable at the time of data entry
@@ Line 88: / Line 89: @@
 . Click "Edit Strain Details" to change the desired information
 	++Note: This process will be like entering new data, except all the fields will be populated with the existing data
 }}
 }}

@@ Line 23: / Line 23: @@
    |content=
 The Tarleton Web Forms are web forms developed specifically for the [http://paige.cb.uga.edu/ Tarleton Research Group].  These forms are static forms that store given data in RDF format to allow for easier querying through SPARQL.
 }}

@@ Line 16: / Line 16: @@
    |content=
 OntoCAT uses a given ontology to allow biologists to select specific triples that they want in the form as data fields.  These triples, and eventually any given data, are stored in a triple store for future retrieval and editing.  Storing the data in triples allows it to be queried using SPARQL queries.
 }}

@@ Line 8: / Line 8: @@
    |title_background=#b0e2ff
    |content=
-OntoCAT is a web application that allows users to create forms, and input data into those forms, based on a given ontology.
+OntoCAT is a framework for dynamic web form creation that assists biologists in creating their own forms.  This framework will allow biologists to create their own forms without needing the guidance of a computer scientist.  The lack of dependency means that biologists will only need to have an ontology on their domain, and they can create their own form specifically for their data.
 }}

OntoCAT - Revision history

Matthan at 15:08, 28 July 2011

Matthan at 15:08, 28 July 2011

Matthan at 15:07, 28 July 2011

Matthan at 15:07, 28 July 2011

Matthan at 14:55, 28 July 2011

Matthan at 14:51, 28 July 2011

Matthan at 14:50, 28 July 2011

Matthan at 14:43, 28 July 2011

Matthan at 14:01, 28 July 2011

Matthan: Created page with "__NOTOC__ {| style="width:100%; vertical-align:top;" | style="width:60%; border:1px solid #cef2e0; background:#cef2e0; vertical-align:top; color:#000;" | {| style="width:100%; v..."

Matthan: Created page with "NOTOC {| style="width:100%; vertical-align:top;" | style="width:60%; border:1px solid #cef2e0; background:#cef2e0; vertical-align:top; color:#000;" | {| style="width:100%; v..."