Difference between revisions of "Trykipedia"
Line 18: | Line 18: | ||
<!--start section left 2 --> | <!--start section left 2 --> | ||
− | |||
− | |||
− | |||
− | |||
− | |||
− | |||
− | |||
− | |||
− | |||
− | |||
− | |||
− | |||
− | |||
− | |||
− | |||
− | |||
− | |||
− | |||
|- | |- | ||
| | | | ||
Line 49: | Line 31: | ||
* [[Cuebee]] - Graphical semantic query interface | * [[Cuebee]] - Graphical semantic query interface | ||
}} | }} | ||
− | <!-- end section left | + | <!-- end section left 2 --> |
− | <!--start section left | + | <!--start section left 3 --> |
|- | |- | ||
| | | | ||
Line 62: | Line 44: | ||
Research in many biological systems, particularly those involving infectious agents, continues to experience an enormous increase in information with the sequencing of genomes, the use of expression profiling, and the completion of proteomic analyses. For example, annotated genomes and comparative analyses of two ''T. cruzi'' related kinetoplastids, ''Trypanosoma brucei'' and ''Leishmania major'', and a whole organism (all life-cycle stages) proteome analysis of ''T. cruzi'' have been published. Data from other sequencing projects in ''T. cruzi'', including ESTs, preexisting and ongoing expression profiling (DNA microarray) and proteome analyses are also available. These dynamic datasets, addressing different but logically related aspects, are distributed over multiple databases that undergo frequent additions and curation. It is difficult to integrate these datasets manually from muliple sources. Therefore, we propose to use ontology-driven technology to integrate local and external datasets to answer biological questions at mulitple level of granularity. [http://www.knoesis.org/research/semsci/application_domain/sem_life_sci/tcruzi_pse/ Project Page] | Research in many biological systems, particularly those involving infectious agents, continues to experience an enormous increase in information with the sequencing of genomes, the use of expression profiling, and the completion of proteomic analyses. For example, annotated genomes and comparative analyses of two ''T. cruzi'' related kinetoplastids, ''Trypanosoma brucei'' and ''Leishmania major'', and a whole organism (all life-cycle stages) proteome analysis of ''T. cruzi'' have been published. Data from other sequencing projects in ''T. cruzi'', including ESTs, preexisting and ongoing expression profiling (DNA microarray) and proteome analyses are also available. These dynamic datasets, addressing different but logically related aspects, are distributed over multiple databases that undergo frequent additions and curation. It is difficult to integrate these datasets manually from muliple sources. Therefore, we propose to use ontology-driven technology to integrate local and external datasets to answer biological questions at mulitple level of granularity. [http://www.knoesis.org/research/semsci/application_domain/sem_life_sci/tcruzi_pse/ Project Page] | ||
}} | }} | ||
− | <!-- end section left | + | <!-- end section left 3 --> |
|}<!-- end left panel --> | |}<!-- end left panel --> | ||
Line 84: | Line 66: | ||
}} | }} | ||
<!--end section right 1 --> | <!--end section right 1 --> | ||
− | |||
<!--start section right 2 --> | <!--start section right 2 --> | ||
+ | |- | ||
+ | | | ||
+ | {{block | ||
+ | |title= Collaborating Institutions | ||
+ | |title_background=#ffffcc | ||
+ | |content= | ||
+ | * [http://knoesis.wright.edu Kno.e.sis Center, Wright State University] | ||
+ | * [http://www.ctegd.uga.edu Tarleton Research Group, Center for Tropical and Emerging Global Diseases(CTEGD), University of Georgia] | ||
+ | * [http://lsdis.cs.uga.edu Large Scale Distributed Information Systems, LSDIS Lab, University of Georgia] | ||
+ | * [http://bioontology.org National Center for Biological Ontologies, NCBO, Stanford University] | ||
+ | * [http://www.sanger.ac.uk The Wellcome Trust Sanger Institute, Cambridge, UK] | ||
+ | * [http://www.fiocruz.br/ioc/cgi/cgilua.exe/sys/start.htm?tpl=home The Oswaldo Cruz Institute (Fiocruz), Brazil] | ||
+ | We invite new members to collaborate with us in extending Parasite Life cycle Ontology (PLO) and/or Parasite Experiment Ontology (PEO). | ||
+ | }} | ||
+ | |||
+ | <!--end section right 2 --> | ||
+ | <!--start section right 3 --> | ||
|- | |- | ||
| | | | ||
Line 94: | Line 92: | ||
[http://bubo.ctegd.uga.edu:2020/Cuebee/ Cuebee] | [http://bubo.ctegd.uga.edu:2020/Cuebee/ Cuebee] | ||
}} | }} | ||
− | <!--end section right | + | <!--end section right 3 --> |
Revision as of 16:36, 19 January 2010
|
|