Difference between revisions of "Singleton Property"
From Knoesis wiki
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=== Q4 === | === Q4 === | ||
| + | <pre> | ||
| + | # Query 4: | ||
| + | # ------------------------------------------------------------------ | ||
| + | # Time profiling for a given statement | ||
| + | # ------------------------------------------------------------------ | ||
| + | |||
| + | PREFIX bkr: <http://mor.nlm.nih.gov/bkr/> | ||
| + | PREFIX dc: <http://purl.org/dc/elements/1.1/> | ||
| + | PREFIX provenir: <http://knoesis.wright.edu/provenir/> | ||
| + | PREFIX rdf: <http://www.w3.org/1999/02/22-rdf-syntax-ns#> | ||
| + | PREFIX rdfs: <http://www.w3.org/2000/01/rdf-schema#> | ||
| + | PREFIX umls: <http://mor.nlm.nih.gov/umls/> | ||
| + | PREFIX meta: <http://mor.nlm.nih.gov/umls/META_> | ||
| + | PREFIX sn: <http://mor.nlm.nih.gov/umls/SEMNET_> | ||
| + | SELECT count(*) | ||
| + | FROM <http://mor.nlm.nih.gov/bkr_instances_sp> | ||
| + | FROM <http://mor.nlm.nih.gov/bkr_metadata> | ||
| + | WHERE { | ||
| + | graph <http://mor.nlm.nih.gov/bkr_instances_sp> { | ||
| + | meta:%s ?st_p_inst ?o . | ||
| + | ?st_p_inst rdf:type sn:%s . FILTER (?o = meta:%s) . | ||
| + | ?st_p_inst provenir:derives_from ?source_inst . | ||
| + | ?source_inst rdf:type ?source_cl . | ||
| + | } . | ||
| + | graph <http://mor.nlm.nih.gov/bkr_metadata> { | ||
| + | ?source_inst dc:date ?source_date . | ||
| + | FILTER(?source_date >= xsd:date("%s") && ?source_date < xsd:date("%s")) | ||
| + | } | ||
| + | } | ||
| + | </pre> | ||
=== Q5 === | === Q5 === | ||
Revision as of 15:37, 9 October 2013
Contents
Singleton Property Resource Page
Singleton Property is a novel approach for making statements about statements in RDF without the use of RDF reification.
Datasets
We implemented the Singleton Property approach in two datasets: BKR and YAGO2S.
BKR
The BKR datasets are implemented using five approaches: the singleton property (SP), the standard RDF reification (R) and three flavors C1, C2 and C3 of the PaCE.
BKR-SP
BKR-R
BKR-C1
BKR-C2
BKR-C3
YAGO2S
We created the RDF-compliant version of YAGO2S using the singleton property approach. The file can be downloaded via yago2s-sp
Below is the complete set of generic properties and their singleton properties in the YAGO2S-SP.
Generic property Number of singleton property instances http://yago-knowledge.org/resource/extractionSource 32598374 http://www.w3.org/1999/02/22-rdf-syntax-ns#type 9019948 http://www.w3.org/2000/01/rdf-schema#label 4200036 http://yago-knowledge.org/resource/isPreferredMeaningOf 2886014 http://www.w3.org/2004/02/skos/core#prefLabel 2886010 http://yago-knowledge.org/resource/isLocatedIn 1262563 http://yago-knowledge.org/resource/hasGender 923364 http://yago-knowledge.org/resource/hasFamilyName 838669 http://yago-knowledge.org/resource/hasGivenName 827681 http://yago-knowledge.org/resource/wasBornOnDate 804816 http://yago-knowledge.org/resource/wasCreatedOnDate 713167 http://yago-knowledge.org/resource/occursSince 553116 http://yago-knowledge.org/resource/isAffiliatedTo 497263 http://yago-knowledge.org/resource/playsFor 412388 http://yago-knowledge.org/resource/hasLongitude 393717 http://yago-knowledge.org/resource/hasLatitude 393250 http://www.w3.org/2000/01/rdf-schema#subClassOf 382532 http://yago-knowledge.org/resource/diedOnDate 361443 http://yago-knowledge.org/resource/occursUntil 337116 http://yago-knowledge.org/resource/created 278455 http://yago-knowledge.org/resource/hasNumberOfPeople 230745 http://yago-knowledge.org/resource/hasWebsite 226393 http://yago-knowledge.org/resource/wasBornIn 218757 http://yago-knowledge.org/resource/happenedOnDate 208894 http://yago-knowledge.org/resource/happenedIn 194161 http://yago-knowledge.org/resource/hasArea 129920 http://yago-knowledge.org/resource/actedIn 127513 http://yago-knowledge.org/resource/hasWordnetDomain 87104 http://yago-knowledge.org/resource/hasWonPrize 73763 http://yago-knowledge.org/resource/byTransport 55871 http://yago-knowledge.org/resource/hasDuration 54741 http://yago-knowledge.org/resource/diedIn 54174 http://yago-knowledge.org/resource/hasHeight 50863 http://yago-knowledge.org/resource/isCitizenOf 46060 http://yago-knowledge.org/resource/wasDestroyedOnDate 42966 http://yago-knowledge.org/resource/directed 41811 http://yago-knowledge.org/resource/hasPopulationDensity 39408 http://yago-knowledge.org/resource/isConnectedTo 33834 http://yago-knowledge.org/resource/livesIn 33628 http://yago-knowledge.org/resource/hasMusicalRole 32681 http://yago-knowledge.org/resource/graduatedFrom 30389 http://yago-knowledge.org/resource/hasMotto 27643 http://yago-knowledge.org/resource/owns 26551 http://yago-knowledge.org/resource/isMarriedTo 26325 http://yago-knowledge.org/resource/influences 26306 http://yago-knowledge.org/resource/wroteMusicFor 24294 http://yago-knowledge.org/resource/hasWeight 21256 http://yago-knowledge.org/resource/hasPredecessor 20574 http://yago-knowledge.org/resource/hasSuccessor 18005 http://yago-knowledge.org/resource/hasChild 17695 http://yago-knowledge.org/resource/participatedIn 16833 http://yago-knowledge.org/resource/hasPages 15616 http://yago-knowledge.org/resource/hasISBN 10917 http://yago-knowledge.org/resource/isLeaderOf 10700 http://yago-knowledge.org/resource/hasLength 9010 http://yago-knowledge.org/resource/holdsPoliticalPosition 6029 http://yago-knowledge.org/resource/edited 5946 http://yago-knowledge.org/resource/hasAirportCode 5715 http://yago-knowledge.org/resource/worksAt 5134 http://yago-knowledge.org/resource/hasRevenue 4114 http://yago-knowledge.org/resource/isPoliticianOf 3752 http://yago-knowledge.org/resource/hasAcademicAdvisor 3340 http://yago-knowledge.org/resource/hasCapital 1937 http://yago-knowledge.org/resource/hasOfficialLanguage 964 http://yago-knowledge.org/resource/dealsWith 947 http://yago-knowledge.org/resource/hasBudget 717 http://yago-knowledge.org/resource/hasCurrency 667 http://yago-knowledge.org/resource/exports 579 http://yago-knowledge.org/resource/isKnownFor 500 http://yago-knowledge.org/resource/isInterestedIn 465 http://yago-knowledge.org/resource/imports 391 http://yago-knowledge.org/resource/hasTLD 270 http://yago-knowledge.org/resource/hasGDP 241 http://yago-knowledge.org/resource/hasExport 175 http://yago-knowledge.org/resource/hasExpenses 174 http://yago-knowledge.org/resource/hasImport 172 http://yago-knowledge.org/resource/hasInflation 155 http://yago-knowledge.org/resource/hasUnemployment 145 http://yago-knowledge.org/resource/hasEconomicGrowth 141 http://yago-knowledge.org/resource/hasGini 130 http://yago-knowledge.org/resource/hasPoverty 84 http://yago-knowledge.org/resource/hasImdb 9 http://yago-knowledge.org/resource/startedOnDate 8
Query Set A
Four sets of queries for R, C1, C2, and C3 are obtained from ProvenanceContextEntity We created an equivalent set of queries for SP approach as the following.
Q1
# Query 1:
# ------------------------------------------------------------------
# All statements for a given PMID (e.g., 17209178)
# ------------------------------------------------------------------
PREFIX bkr: <http://mor.nlm.nih.gov/bkr/>
PREFIX dc: <http://purl.org/dc/elements/1.1/>
PREFIX provenir: <http://knoesis.wright.edu/provenir/>
PREFIX rdf: <http://www.w3.org/1999/02/22-rdf-syntax-ns#>
PREFIX rdfs: <http://www.w3.org/2000/01/rdf-schema#>
PREFIX umls: <http://mor.nlm.nih.gov/umls/>
PREFIX meta: <http://mor.nlm.nih.gov/umls/META_>
PREFIX sn: <http://mor.nlm.nih.gov/umls/SEMNET_>
SELECT ?st_s_inst ?st_p_inst ?st_o_inst
FROM <http://mor.nlm.nih.gov/bkr_instances_sp>
WHERE {
?st_s_inst ?st_p_inst ?st_o_inst .
?st_p_inst provenir:derives_from bkr:PUBMED_99992-INST .
}
Q2
# Query 2: C0012963|STIMULATES|C0598981|2006-12-01|2008-12-01
# ------------------------------------------------------------------
# All sources for a given statement
# (Lipoproteins AFFECTS Inflammatory cell)
# ------------------------------------------------------------------
PREFIX bkr: <http://mor.nlm.nih.gov/bkr/>
PREFIX dc: <http://purl.org/dc/elements/1.1/>
PREFIX provenir: <http://knoesis.wright.edu/provenir/>
PREFIX rdf: <http://www.w3.org/1999/02/22-rdf-syntax-ns#>
PREFIX rdfs: <http://www.w3.org/2000/01/rdf-schema#>
PREFIX umls: <http://mor.nlm.nih.gov/umls/>
PREFIX meta: <http://mor.nlm.nih.gov/umls/META_>
PREFIX sn: <http://mor.nlm.nih.gov/umls/SEMNET_>
SELECT ?source_inst
FROM <http://mor.nlm.nih.gov/bkr_instances_sp>
WHERE {
meta:C0012963 ?st_p_inst meta:C0598981 .
?st_p_inst rdf:type sn:STIMULATES .
?st_p_inst provenir:derives_from ?source_inst .
}
Q3
# Query 3:
# ------------------------------------------------------------------
# Frequency by source for 1 statement
# ------------------------------------------------------------------
PREFIX bkr: <http://mor.nlm.nih.gov/bkr/>
PREFIX dc: <http://purl.org/dc/elements/1.1/>
PREFIX provenir: <http://knoesis.wright.edu/provenir/>
PREFIX rdf: <http://www.w3.org/1999/02/22-rdf-syntax-ns#>
PREFIX rdfs: <http://www.w3.org/2000/01/rdf-schema#>
PREFIX umls: <http://mor.nlm.nih.gov/umls/>
PREFIX meta: <http://mor.nlm.nih.gov/umls/META_>
PREFIX sn: <http://mor.nlm.nih.gov/umls/SEMNET_>
SELECT ?source_name count(?source_name)
FROM <http://mor.nlm.nih.gov/bkr_instances_sp>
FROM <http://mor.nlm.nih.gov/bkr_schema>
WHERE {
graph <http://mor.nlm.nih.gov/bkr_instances_sp> {
meta:C0006307 ?st_p_inst ?o .
?st_p_inst rdf:type sn:TREATS .
?st_p_inst provenir:derives_from ?source_inst .
?source_inst rdf:type ?source_cl .
} .
graph <http://mor.nlm.nih.gov/bkr_schema> {
?source_cl rdfs:label ?source_name .
} .
}
Q4
# Query 4:
# ------------------------------------------------------------------
# Time profiling for a given statement
# ------------------------------------------------------------------
PREFIX bkr: <http://mor.nlm.nih.gov/bkr/>
PREFIX dc: <http://purl.org/dc/elements/1.1/>
PREFIX provenir: <http://knoesis.wright.edu/provenir/>
PREFIX rdf: <http://www.w3.org/1999/02/22-rdf-syntax-ns#>
PREFIX rdfs: <http://www.w3.org/2000/01/rdf-schema#>
PREFIX umls: <http://mor.nlm.nih.gov/umls/>
PREFIX meta: <http://mor.nlm.nih.gov/umls/META_>
PREFIX sn: <http://mor.nlm.nih.gov/umls/SEMNET_>
SELECT count(*)
FROM <http://mor.nlm.nih.gov/bkr_instances_sp>
FROM <http://mor.nlm.nih.gov/bkr_metadata>
WHERE {
graph <http://mor.nlm.nih.gov/bkr_instances_sp> {
meta:%s ?st_p_inst ?o .
?st_p_inst rdf:type sn:%s . FILTER (?o = meta:%s) .
?st_p_inst provenir:derives_from ?source_inst .
?source_inst rdf:type ?source_cl .
} .
graph <http://mor.nlm.nih.gov/bkr_metadata> {
?source_inst dc:date ?source_date .
FILTER(?source_date >= xsd:date("%s") && ?source_date < xsd:date("%s"))
}
}
Q5
Query Set B
We created five equivalent sets of SPARQL queries for SP approach as the following.
Q1
Q1 - SP
Q1 - R
Q1 - C1
Q1 - C2
Q1 - C3
Q2
Q2 - SP
Q2 - R
Q2 - C1
Q2 - C2
Q2 - C3
Q3
Q3 - SP
Q3 - R
Q3 - C1
Q3 - C2
Q3 - C3
Q5
OWL 2 Compatibility
@prefix : <http://nlm.nih.gov/mesh/> . @prefix rdf: <http://www.w3.org/1999/02/22-rdf-syntax-ns#> . @prefix owl: <http://www.w3.org/2002/07/owl#> . @prefix rdfs: <http://www.w3.org/2000/01/rdf-schema#> . :Descriptor1 :co-occurs-1234 :Descriptor2 . :co-occurs-1234 :createdBy :Vinh . :co-occurs-1234 rdf:singletonPropertyOf :co-occurs . rdf:singletonPropertyOf rdfs:subPropertyOf rdf:type . :Descriptor rdf:type owl:Class . :User rdf:type owl:Class . :co-occurs rdf:type owl:Class . :co-occurs rdf:type owl:ObjectProperty . :createdBy rdf:type owl:ObjectProperty . :Descriptor1 rdf:type :Descriptor . :Descriptor2 rdf:type :Descriptor . :Vinh rdf:type :User . :co-occurs-1234 rdf:type owl:ObjectProperty . :co-occurs-1234 rdf:type :co-occurs .
