Parasite Experiment ontology
The ontology comprehensively models the processes, instruments, parameters, and sample details that will be used to
annotate experimental results with “provenance” metadata (derivation history of results). For example, given a drug
selected sample (a sample that has been grown under selective drug pressure. source: Parasite Experiment ontology),
details about the drug, drug concentration, the duration for the drug selection process, and the transfected sample
used as input to the drug selection process are modeled in the ontology. This extensive provenance metadata
modeled in this ontology will enable publication of results in journals, conferences with details of the method
used to arrive at the result. Parasite Experiment ontology currently has 71 classes and 15 properties with a DL
expressivity of ALCHF(D) and incorporates concepts defined in Parasite Life Cycle ontology to maximize re-use of
existing ontological resources.
List of ontology classes
table width=65%
tr valign=top
td
- A
ul li Accession Number/li /li /ul
- C
ul
liCell Cloning/li
liCloned Sample/li
/ul
- D
ul
liDrug/li
liDrug Concentration/li
liDrug Resistant Plasmid/li
liDrug Selected Sample/li
liDrug Selection/li
/ul
- G
ul
liGene Knockout Protocol/li
/ul
- H
ul
liHost organism/li
liHybridisation/li
/ul
- K
ul
liKnockout Construct Plasmid/li
liKnockout Plasmid/li
/ul
- L
ul
liLabelling/li
liLifecycle stage/li
/ul
- M
ul
liMedium/li
liMicroarray Analysis/li
liMicroarray Plate Reader/li
/ul
- N
ul
liNucleic Acid/li
/ul
- O
ul
liOrganism/li
/ul
- P
ul
liPhenotype/li
liPlasmid/li
liPlasmid Construction/li
liPolymerase Chain Reaction/li
liPrehybridisation/li
liPurity/li
/ul
- S
ul
liSample/li
liSequence Extraction/li
liSignal Intensity/li
liStrains/li
/ul
/td
td
- T
ul
liTcruzi Sample/li
liTranscriptome Protocol/li
liTransfected Sample/li
liTransfection/li
liTransfection Buffer/li
liTransfection Machine/li
/ul
/td
/tr
/table br/
Collaborating Institutions
br/
We invite new members to collaborate with us in extending this ontology.
Feedback/Comments
Please add feedback/comments in [http://knoesis.wright.edu/internal/wiki/index.php?
title=Talk:TcruziExperiri_ontologyaction=edit Discussion Section] on the top of this wiki page.
