Difference between revisions of "Parasite Experiment ontology"
| Line 141: | Line 141: | ||
;D | ;D | ||
<ul> | <ul> | ||
| − | + | <li>[[Date Time Description]]</li> | |
| + | <li>[[Drug]]</li> | ||
<li>[[Drug Attribute]]</li> | <li>[[Drug Attribute]]</li> | ||
<li>[[Drug Concentration]]</li> | <li>[[Drug Concentration]]</li> | ||
| Line 157: | Line 158: | ||
;F | ;F | ||
<ul> | <ul> | ||
| − | <li>[[Flanking Region]]</li> | + | <li>[[Flanking Region]]</li> |
| + | <li>[[Freezer]]</li> | ||
<li>[[Freezer Location]]</li> | <li>[[Freezer Location]]</li> | ||
| Line 187: | Line 189: | ||
<li>[[Knockout Plasmid]]</li> | <li>[[Knockout Plasmid]]</li> | ||
<li>[[Knockout Plasmid Construction]]</li> | <li>[[Knockout Plasmid Construction]]</li> | ||
| + | <li>[[Knockout Project Protocol]]</li> | ||
| + | <li>[[Knockout Region Construct Protocol]]</li> | ||
</ul> | </ul> | ||
| Line 248: | Line 252: | ||
<ul> | <ul> | ||
<li>[[Sample]]</li> | <li>[[Sample]]</li> | ||
| + | <li>[[Sample Characterization]]</li> | ||
<li>[[Scanning]]</li> | <li>[[Scanning]]</li> | ||
<li>[[Sequence Coverage]]</li> | <li>[[Sequence Coverage]]</li> | ||
Revision as of 19:28, 7 April 2010
| What is Parasite Experiment Ontology (PEO)? |
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The ontology comprehensively models the processes, instruments, parameters, and sample details that will be used to annotate experimental results with “provenance” metadata (derivation history of results). For example, given a drug selected sample (a sample that has been grown under selective drug pressure. source: Parasite Experiment ontology), details about the drug, drug concentration, the duration for the drug selection process, and the transfected sample used as input to the drug selection process are modeled in the ontology. This extensive provenance metadata modeled in this ontology will enable publication of results in journals, conferences with details of the method used to arrive at the result. PEO has 110 classes and 27 properties with a logic expressivity of ALCHQ(D) and incorporates concepts defined in Parasite Life Cycle ontology (PLO) to maximize reuse of existing ontological resources. The new version of PEO (ver 0.2) was released for listing and public use at NCBO’s BioPortal in December 2009. |
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 Snapshot of class hierarchy of the parasite experiment ontology using Protege toolkit. Detail of this ontology is available at NCBO BioPortal |
Collaborating Institutions
We invite new members to collaborate with us in extending this ontology.
Feedback/Comments
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