Knowledge-Aware-Search

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This wiki contains supplementary materials for the research article currently under review entitled Knowledge-Aware Search. This work was developed as part of the PREDOSE project, which is an inter-disciplinary project between the Ohio Center of Excellence in Knowledge-enabled Computing (Kno.e.sis) and the Center for Interventions, Treatment and Addictions Research (CITAR) at Wright State University. PREDOSE is the acronym for PREscription Drug abuse Online Surveillance and Epidemiology.

Overview

People

Delroy Cameron
Nishita Jaykumar
Gary A. Smith
Gaurish Anand
Swapnil Soni
Krishnaprasad Thirunarayan
Kera Z. Watkins
Amit P. Sheth

Framework

Ontology

Context-Free Grammar and Query Language Specification

LEGEND

RULES
ONTOLOGY
LEXICON
LEXICON/ONTOLOGY
EXAMPLES


Primary Nonterminals

Class Name Class Source Class Type
INTERVAL Alphabet Compound
FREQUENCY Alphabet Compound
DOSAGE Alphabet Compound
ENTITY Ontology Simple
ROA (Route-Of-Administration) Lexicon/Ontology Simple
DRUGFORM Lexicon/Ontology Simple
SIDEEFFECT Lexicon/Ontology Simple
EMOTION Lexicon Simple
PRONOUN Lexicon Simple
INTENSITY Lexicon Simple
SENTIMENT Lexicon Simple

 

Ubiquitous Nonterminals

EQUIVALENCE

> greater than | more than | above | in excess of | slightly above | little more | bit more | slightly more | high | higher | highest | higher than
< less than | lower than | below | in lack of | slightly below | little less | bit less | slightly less
= exactly | precisely
>= greater than or equal to | more than | above | in excess of | slightly above | little more | bit more | slightly more | exactly | precisely | high | higher | highest | higher than
<= less than or equal to | less than | lower than | below | in lack of | slightly below | little less | bit less | slightly less | exactly | precisely

 

DEFINITIONS

NUMERIC_AMOUNT -999.99 | ... | 0 | ... | 3-4 | ... | 24/7 | 999
WORDED_AMOUNT one | once | two | twice | three | thrice | four | five | six | seven | eight | nine | ten | eleven | twelve | thirteen | fourteen | fifteen | sixteen | seventeen | eighteen | nineteen | twenty | thirty | forty | fifty | sixty | seventy | eighty | ninty | hundred
NUMBER 0 | 1 | ... | 100
AMOUNT NUMBER |
WORDED_AMOUNT
RANGE [0 - NUMBER] WORDS

 

Ontology Nonterminals

Buprenorphine addnok | bup | bupe | bupes | bupey | buprel | buprenex | buprenorphine | buprenorphine analgesic | buprenorphine opioid dependence | buprenorphone | buprigesic | bups | butrans | film | films | morgesic | norspan | probuphine | saboxine | sobos | strip | strips | sub | subbies | subox | suboxene | suboxone | suboxone film | suboxone tablet | subs | subutex | tecs | temgesic | tex | tidigesic | xone
Heroin

 

Grammar Alphabet Nonterminals

INTERVAL

PAST_DETERMINER ago | prior | previous | since | before | last | past
PRESENT_DETERMINER now | about | around | several | couple | every | all | this
FUTURE_DETERMINER next | later | after
PERIOD PAST_DETERMINER |
PRESENT_DETERMINER |
FUTURE_DETERMINER
TIME_INDICATOR
HOUR hour | hours | hr | hrs
MINUTE minute | minutes | min | mins
SECOND second | seconds | sec | secs
DURATION_INDICATOR
DECADE decade | decades
YEAR year | years | yr | yrs | annum
MONTH month | months | mth| mths | mo
WEEK week | weeks| wk | wks
DAY day | days | night | nights | nite | nites | morning | mornings | mornin | evening | evenin | evenings | afternoon | noon
DURATION_PERIOD PAST_DETERMINER RANGE PERIOD years ago, weeks prior
PRESENT_DETERMINER RANGE PERIOD weeks now
FUTURE_DETERMINER RANGE PERIOD weeks later, days after
PERIOD_DURATION PAST_DETERMINER RANGE DURATION_INDICATOR last year, previous day
PRESENT_DETERMINER RANGE DURATION_INDICATOR about a year, around a month
FUTURE_DETERMINER RANGE DURATION_INDICATOR later years, next day
TIME_PERIOD TIME_INDICATOR RANGE PAST_DETERMINER hours ago, minutes before
TIME_INDICATOR RANGE PRESENT_DETERMINER hours now
TIME_INDICATOR RANGE FUTURE_DETERMINER hours later, minutes after
PERIOD_TIME PAST_DETERMINER RANGE TIME_INDICATOR last hour
PRESENT_DETERMINER RANGE TIME_INDICATOR several hours, couple of minutes
FUTURE_DETERMINER RANGE TIME_INDICATOR next hour
AMOUNT_TIME_PERIOD AMOUNT RANGE TIME_PAST_PERIOD 5 minutes ago
AMOUNT RANGE TIME_PRESENT_PERIOD 10 hours now
AMOUNT RANGE TIME_FUTURE_PERIOD 5 minutes later
AMOUNT_TIME AMOUNT RANGE TIME_INDICATOR 15 seconds
PERIOD_AMOUNT_TIME PAST_DETERMINER RANGE AMOUNT_TIME last 2 hours, past 2 minutes
PRESENT_DETERMINER RANGE AMOUNT_TIME around 2 hours
FUTURE_DETERMINER RANGE AMOUNT_TIME next 15 seconds, after 2 minutes
AMOUNT_DURATION_PERIOD AMOUNT RANGE DURATION_PAST_PERIOD 5 years ago
AMOUNT RANGE DURATION_PRESENT_PERIOD 5 years now
AMOUNT RANGE DURATION_FUTURE_PERIOD 5 years later, 9 months after
AMOUNT_DURATION AMOUNT RANGE DURATION_INDICATOR 15 months
PERIOD_AMOUNT_DURATION PAST_DETERMINER RANGE AMOUNT_DURATION last 15 weeks, last 2 years
PRESENT_DETERMINER RANGE AMOUNT_DURATION about 3 monts, around five years
FUTURE_DETERMINER RANGE AMOUNT_DURATION next 15 weeks, after 2 years
INTERVAL DURATION_PERIOD |
PERIOD_DURATION |
TIME_PERIOD |
PERIOD_TIME |
AMOUNT_TIME_PERIOD |
AMOUNT_TIME |
PERIOD_AMOUNT_TIME |
AMOUNT_DURATION_PERIOD |
AMOUNT_DURATION |
PERIOD_AMOUNT_DURATION

 

FREQUENCY

FREQUENCY_ITEM hourly | daily | weekly | bi-weekly | biweekly | monthly | yearly | annually
FREQUENCY_INDICATOR times | times a | times an | both times
PER_INDICATOR per | / | FREQUENCY_INDICATOR
PER_SECOND PER_INDICATOR RANGE SECOND /second, times a second
PER_MINUTE PER_INDICATOR RANGE MINUTE per minute, /minute
PER_HOUR PER_INDICATOR RANGE HOUR | hourly per hour, times an hour
PER_DAY PER_INDICATOR RANGE DAY | daily | nightly / day, per day
PER_WEEK PER_INDICATOR RANGE WEEK | weekly, bi-weekly | biweekly per week, /week
PER_MONTH PER_INDICATOR RANGE MONTH | monthly | bi-monthly | bimonthly /month, times a month
PER_YEAR PER_INDICATOR RANGE YEAR | yearly | annually per year, /year
PER_DECADE PER_INDICATOR RANGE DECADE times a year, per year
PER_TIMEINDICATOR PER_SECOND |
PER_MINUTE |
PER_HOUR |
PER_DAY |
PER_WEEK |
PER_MONTH |
PER_YEAR |
PER_DECADE
per min, per hour, /min, /hour
PER_DURATION_INDICATOR PER_INDICATOR RANGE DURATION_INDICATOR per day, per week, /week, /month
AMOUNT_PER_TIME_INDICATOR AMOUNT RANGE PER_TIME_INDICATOR 5 per min, per hour, 24 mg /min
AMOUNT_FREQUENCY AMOUNT RANGE FREQUENCY_INDICATOR 5 times
AMOUNT_FREQUENCY_DURATION AMOUNT_FREQUENCY RANGE DURATION_INDICATOR 5 times a day
FREQUENCY_DURATION FREQUENCY_INDICATOR RANGE DURATION_INDICATOR times a day
FREQUENCY_TIME FREQUENCY_INDICATOR RANGE TIME_INDICATOR times a hour
PERIOD_FREQUENCY_DURATION PERIOD_DETERMINER RANGE FREQUENCY_INDICATOR several times a day
PERIOD_FREQUENCY_TIME PERIOD_DETERMINER RANGE FREQUENCY_TIME several times a day
AMOUNT_FREQUENCY_TIME AMOUNT RANGE FREQUENCY_TIME several times a day
AMOUNT_PER_TIME AMOUNT RANGE PER_TIME_INDICATOR 5 per min, per hour, 24 mg /min
AMOUNT_PER_DURATION AMOUNT RANGE FREQUENCY_TIME 5 per day, 10 per week
FREQUENCY PER_TIME_INDICATOR |
PER_DURATION_INDICATOR |
AMOUNT_FREQUENCY_DURATION |
PERIOD_FREQUENCY_DURATION |
PERIOD_FREQUENCY_TIME |
AMOUNT_FREQUENCY_TIME |
AMOUNT_PER_TIME |
AMOUNT_PER_DURATION
|
FREQUENCY_ITEM

 

DOSAGE

CUBIC_CENTIMETER cc | ccs | cubic c | cubic cs | cubic centimeter | cubic centimeters | cubic centimetres | cubic centimetre | cubic centi-meter | cubic centi-meters | cubic centi-metre | cubic centi-metres
BAG bag | bags
POUND lb | lbs | pound | pounds
GRAM g | gs | gm | gms | gram | grams
MILLIGRAM mg | mgs | milligram | milligrams | milli-gram | milli-grams
MICROGRAM ug | ugs | mcg | mcgs | microgram | micrograms | micro-gram | micro-grams
KILOGRAM kg | kgs | kilogram | kilograms | kilo-gram | kilo-grams
LITER litre | litres | liter | liters
MILLILITER ml | mls | millilitre | millilitres | milliliter | milliliters | milli-litre | milli-litres | milli-liter | milli-liters
MICROLITER mcl | mcls | microlitre | microlitres | microliter | microliters | micro-litre | micro-litres | micro-liter | micro-liters
OUNCE oz | ozs | ounce | ounces
TABLET tablet | tablets | tab | tabs
UNIT CUBIC_CENTIMETER |
BAG |
POUND |
GRAM |
MILLIGRAM |
MICROGRAM |
KILOGRAM |
LITER |
MILLILITER |
MICROLITER |
OUNCE |
TABLET
NUMERIC_AMOUNT_UNIT NUMBER_AMOUNT |
UNIT
1-5 grams, 2 mcg
WORDED_NUMERIC_AMOUNT_UNIT WORD_AMOUNT |
UNIT
hundred milligrams, one ecstasy tablet
DOSAGE NUMERIC_AMOUNT_UNIT |
WORDED_NUMERIC_AMOUNT_UNIT

 

Lexicon Nonterminals

PRONOUN

DEMONSTRATIVE_PRONOUN this | that | these | those
PERSONAL_PRONOUN i | me | you | she | her | he | him | it | we | us | they | them
POSSESSIVE_PRONOUN my | our | ours | your | yours | his | her | hers | its | their | theirs | mine
REFLEXIVE_PRONOUN myself | ourselves | yourself | yourselves | himself | herself | itself | themselves
RELATIVE_PRONOUN that | which | who | whom | whose | whichever | whoever | whomever
INDEFINITE_PRONOUN anybody | anyone | anything | each | either | everybody | everyone | everything | neither | nobody | no one | nothing | one | somebody | someone | something | both | few | many | several | all | any | most | none | some
INTERROGATIVE_PRONOUN what | who | which | whom | whose

 

INTENSITY

LOW low | very low | lower | lower than | lowest | small | very small | smaller | smaller than | smallest | less | less than | less is more | least
AVERAGE average | ideal
HIGH high | very high | higher | highest | large | very large | larger | largest | more | most | excess | excessive

 

ROA (Route-of-Administration)

ENTERAL ate | chewing | drink | eat | insufflate | plug | plugged | smoke | smoked | sniff | snort
EPIDURAL inject | injected | injection
INTRAARTERIAL IV | IVed | IV’ed | IVing | IV’ing | inject | injected | injection
INTRACARDIAC inject | injected | injection
INTRACEREBRAL inject | injected | injection
INTRADERMAL IV | IV’ed | IVing | inject | injected | injection | sniff | snort | snorting | bumping | railing | doozing
INTRAMUSCULAR inject | injected | injection | skin poppin
INTRAVENOUS IV | IVed | IV’ed | IVing | IV’ing | inject | injected | injection
INHALATIONAL smoke | smokes | smoked | smoking | sniff | sniffed | sniffing |snort | snorted | snorting | bumping | railing | doozing
INTRAPERITONEAL inject | injected | injection
INTRATHECAL inject | injected | injection
INTRAOSSEOUS INFUSION inject | injected | injection
NASAL sniff | snort | snorting | bumping | railing | doozing
PARENTERAL inject | injected | injection
TRANSDERMAL patch | patches
TRANSMUCOSAL snort | snorted | snorting | sniff | sniffed | sniffing | bumping | railing | doozing
TOPICAL patch | patches
SUBCUTANEOUS inject | injected | injection

 

Lexico-ontology Nonterminals

SIDEEFFECT

MILD bruising | itching | itching of skin | tingling | tingling in arms | tingling in hands | tingling legs | tingling in body parts | burning in fingers | burning in toes | burning in feet | burning in body parts | changes in behavior | cold | cold hands | cold feet | numbing of hands | numbing of feet | numbing of fingers | numbness of hands | numbness in feet | numbness in toes | numbness in fingers | nodding | muscle pain | muscle stiffness | muscle cramps | muscle weakness | muscle aches | muscle tenderness | loss of appetite | loss of thirst | lightheadedness | light-colored stool | redness | leg redness | swelling of the eyelid | redness of the eyelid | light-colored bowel movement | leg pain | leg swelling | leg tenderness | lack of sweating | lack of energy | itching sensation | burning sensation | irritation at the site of application | irritation at the injection site | increased thirst | increased sensitivity to light | increased sensitivity to glare | increased sensitivity to sun | inability to pass gas | inability to have a bowel movement | ill effects | hoarseness | frequent urination | frequent urge to urinate | tiredness | sore throat | fertility problem | pain in arm | pain in leg | pain in the back | pain in side | temporary blurred vision | pain in stomach | pain in the joints | pain in the upper right part of the stomach | fatigue | feeling anxious | aching pain in the hips | aching pain in the groin | difficulty doing exercise | aching pain in the thighs | swelling in the big toe | pale stools | dark stools | black stools | pale skin | paleness | paleness of tongue | paleness of lips | paleness of palms | gray