Revision as of 17:57, 2 May 2013

This wiki contains documentation for the article on Knowledge-Aware Search, developed as part of the PREDOSE project. PREDOSE is the acronym for PREscription Drug abuse Online Surveillance and Epidemiology, which is an inter-disciplinary project between the Ohio Center of Excellence in Knowledge-enabled Computing (Kno.e.sis) and the Center for Interventions, Treatment and Addictions Research (CITAR) at Wright State University.

Overview

People

Delroy Cameron
Nishita Jaykumar
Gary A. Smith
Gaurish Anand
Swapnil Soni
Krishnaprasad Thirunarayan
Kera Z. Watkins
Amit P. Sheth

Framework

Ontology

Grammar and Language Specification

LEGEND

EXAMPLES
ONTOLOGY SOURCE

Template Classes

Template Class Name	Class Source	Class Type
INTERVAL	Grammar	Compound
FREQUENCY	Grammar	Compound
DOSAGE	Grammar	Compound
INTENSITY	Grammar	Compound
ENTITY	Ontology	Simple
PRONOUN	Grammar	Simple
ROA (Route-Of-Administration)	Grammar	Simple
SIDEEFFECT	Grammar	Simple
EMOTION	Grammar	Simple
DRUGFORM	Grammar	Simple

Compound Template Classes

NUMBER_EXT

-999.99 | -999.98 | ... | 0 | 0.1 | ... | 999

INTERVAL

PAST_PERIOD_DETERMINER	ago \| prior \| previous \| since \| before \| last
PRESENT_PERIOD_DETERMINER	now \| about \| around \| several \| couple \| every \| all
FUTURE_PERIOD_DETERMINER	next \| later \| after
PERIOD_DETERMINER
	PAST_PERIOD_DETERMINER
	PRESENT_PERIOD_DETERMINER
	FUTURE_PERIOD_DETERMINER
TIME_INTERVAL	hour \| hours \| hrs \| hr \| minute \| minutes \| mins \| min \| second \| seconds \| sec \| secs
DURATION_INTERVAL	decade \| decades \| year \| years \| yrs \| month \| months \| mths \| mo \| wk \| week \| weeks \| wks \| day \| days \| night \| nite \| morning \| mornin \| evening \| afternoon \| noon
WORD_AMOUNT	one \| once \| two \| twice \| three \| thrice \| four \| five \| six \| seven \| eight \| nine \| ten \| eleven \| twelve \| thirteen \| fourteen \| fifteen \| sixteen \| seventeen \| eighteen \| nineteen \| twenty \| thirty \| forty \| fifty \| sixty \| seventy \| eighty \| ninty \| hundred
NUMBER	0 \| 1 \| ... \| 100
AMOUNT	NUMBER \| WORD_AMOUNT
DURATION_PERIOD	DURATION_INTERVAL RANGE PERIOD_DETERMINER	years ago, weeks prior
PERIOD_DURATION	PERIOD_DETERMINER RANGE DURATION_INTERVAL	next year, previous day
TIME_PERIOD	TIME_INTERVAL RANGE PERIOD_DETERMINER	hours ago, minutes before
PERIODTIME	PERIOD_DETERMINER RANGE TIME_INTERVAL	next hour, several minutes
AMOUNT_TIME_PERIOD	AMOUNT RANGE TIME_PERIOD	5 minutes ago
AMOUNT_TIME	AMOUNT RANGE TIME_INTERVAL	15 seconds
PERIOD_AMOUNT_TIME	PERIOD_DETERMINER RANGE AMOUNT_TIME	next 15 seconds, after 2 minutes
AMOUNT_DURATION_PERIOD	AMOUNT RANGE DURATION_PERIOD	5 years ago
AMOUNT_DURATION	AMOUNT RANGE DURATION_INTERVAL	15 months
PERIOD_AMOUNT_DURATION	PERIOD_DETERMINER RANGE AMOUNT_DURATION	next 15 weeks, after 2 years
INTERVAL	DURATION_PERIOD \| PERIOD_DURATION \| TIME_PERIOD \| PERIOD_TIME \| AMOUNT_TIME_PERIOD \| AMOUNT_TIME \| PERIOD_AMOUNT_TIME \| AMOUNT_DURATION_PERIOD \| AMOUNT_DURATION \| PERIOD_AMOUNT_DURATION

FREQUENCY

FREQUENCY_INDICATOR	hourly \| daily \| weekly \| bi-weekly \| biweekly \| monthly \| yearly \| annually \| times \| times a \| both times
PER_INDICATOR	per \| /
PERTIMEINDICATOR	PERINDICATOR RANGE TIMEINDICATOR	per min, per hour, /min, /hour
PERDURATIONINDICATOR	PERINDICATOR RANGE DURATIONDICATOR	per day, per week, /week, /month
AMOUNTPERTIMEINDICATOR	AMOUNT RANGE PERTIMEINDICATOR	5 per min, per hour, 24 mg /min
AMOUNTFREQUENCY	AMOUNT RANGE FREQUENCY_INDICATOR	5 times
AMOUNTFREQUENCYDURATION	AMOUNTFREQUENCY RANGE DURATIONINDICATOR	5 times a day
FREQUENCYDURATION	FREQUENCY_INDICATOR RANGE DURATIONDICATOR	times a day
FREQUENCYTIME	FREQUENCY_INDICATOR RANGE TIMEINDICATOR	times a hour
PERIODFREQUENCYDURATION	PERIODDETERMINER RANGE FREQUENCY_INDICATOR	several times a day
PERIODFREQUENCYTIME	PERIODDETERMINER RANGE FREQUENCYTIME	several times a day
AMOUNTFREQUENCYTIME	AMOUNT RANGE FREQUENCYTIME	several times a day
AMOUNTPERTIME	AMOUNT RANGE PERTIMEINDICATOR	5 per min, per hour, 24 mg /min
AMOUNTPERDURATION	AMOUNT RANGE FREQUENCYTIME	5 per day, 10 per week
HOUR_FREQ		hour, next few hours, per hour, /hour,hourly, every 16 hours, every one hour
DAY_FREQ		a day, 5 times a day, 2 days a week, 8 days a month, every other day, everyday, 5 per day, twice per day, once per day, one per day, 7mg per day, twice a day, times a day, thrice a day, once a day, several times a day, daily, next day, next few days, next 5 days, few days, two per day, /day, all night
WEEK_FREQ		a week, week, weekly, bi-weekly, every week, once a week, twice a week, thrice a week, five times a week, once every week, twice every week, couple of weeks, weeks before, /week, weeks, about six weeks
MONTH_FREQ		monthly, every month, few months, per month, /mo, /month
YEAR_FREQ		yearly, annually
FREQUENCY	PERTIMEINDICATOR \| PERDURATIONINDICATOR \| AMOUNTFREQUENCYDURATION \| PERIODFREQUENCYDURATION \| PERIODFREQUENCYTIME \| AMOUNTFREQUENCYTIME \| AMOUNTPERTIME \| AMOUNTPERDURATION

DOSAGE

CUBIC_CENTIMETER	cc \|ccs \| cubic c \|cubic cs \| cubic centimeter \| cubic centimeters \| cubic centimetres \| cubic centimetre \| cubic centi-meter \|cubic centi-meters \| cubic centi-metre \| cubic centi-metres
BAG	bag \| bags
POUND	lb \| lbs \| pound \| pounds
GRAM	g \| gs \| gm \| gms \| gram \| grams
MILLIGRAM	mg \| mgs \| milligram \| milligrams \| milli-gram \| milli-grams
MICROGRAM	ug \| ugs \| mcg \| mcgs \| microgram \| micrograms \| micro-gram \| micro-grams
KILOGRAM	kg \| kgs \| kilogram \| kilograms \| kilo-gram \| kilo-grams
LITER	litre \| litres \| liter \| liters
MILLILITER	ml \| mls \| millilitre \| millilitres \| milliliter \| milliliters \| milli-litre \| milli-litres \| milli-liter \| milli-liters
MICROLITER	mcl \| mcls \| microlitre \| microlitres \| microliter \| microliters \| micro-litre \| micro-litres \| micro-liter \| micro-liters
OUNCE	oz \| ozs \| ounce \| ounces
TABLET	tablet \| tablets \| tab \| tabs
UNIT	CUBIC_CENTIMETER \| BAG \| POUND \| GRAM \| MILLIGRAM \| MICROGRAM \| KILOGRAM \| LITER \| MILLILITER \| MICROLITER \| OUNCE \| TABLET

INTENSITY

LOW	very low \| high \| high tolerance \| very small dose \| less is more \| lower \| less \| less than \| low
AVERAGE	ideal dose \| average
HIGH	very high \| high \| high tolerance \| higher \| large \| largest \| larger \| more \| large dose \| high

Simple Template Classes

PRONOUN

DEMONSTRATIVE_PRONOUN	that \| these \| those
PERSONAL_PRONOUN	me \| you \| she \| her \| he \| him \| it \| we \| us \| you \| they \| them
POSSESSIVE_PRONOUN	your \| his \| her \| its \| our \| your \| their \| mine \| yours \| his \| hers \| ours \| yours \| theirs
REFLEXIVE_PRONOUN	ourselves \| yourself \| yourselves \| himself \| herself \| itself \| themselves
RELATIVE_PRONOUN	which \| who \| whom \| whose \| whichever \| whoever \| whomever
INDEFINITE_PRONOUN	anyone \| anything \| each \| either \| everybody \| everyone \| everything \| neither \| nobody \| no \| one \| nothing \| one \| somebody \| someone \| something \| both \| few \| many \| several \| all \| any \| most \| none \| some
INTERROGATIVE_PRONOUN	who \| which \| whom \| whose

ROA (Route-of-Administration)

ENTERAL	chewing \| drink \| eat \| insufflate \| plug \| plugged \| smoke \| smoked \| sniff \| snort
EPIDURAL	injected \| injection
INTRAARTERIAL	IVed \| IV’ed \| IVing \| IV’ing \| inject \| injected \| injection
INTRACARDIAC	injected \| injection
INTRACEREBRAL	injected \| injection
INTRADERMAL	IV’ed \| IVing \| inject \| injected \| injection \| sniff \| snort \| snorting \| bumping \| railing \| doozing
INTRAMUSCULAR	injected \| injection \| skin poppin
INTRAVENOUS	IVed \| IV’ed \| IVing \| IV’ing \| inject \| injected \| injection
INHALATIONAL	smokes \| smoked \| smoking \| sniff \| sniffed \| sniffing \|snort \| snorted \| snorting \| bumping \| railing \| doozing
INTRAPERITONEAL	injected \| injection
INTRATHECAL	injected \| injection
INTRAOSSEOUS INFUSION	injected \| injection
NASAL	snort \| snorting \| bumping \| railing \| doozing
PARENTERAL	injected \| injection
TRANSDERMAL	patches
TRANSMUCOSAL	snorted \| snorting \| sniff \| sniffed \| sniffing \| bumping \| railing \| doozing
TOPICAL	patches
SUBCUTANEOUS	injected \| injection

SIDEEFFECT

MILD	itching \| tingling \| changes in behavior \| cold \| cold hands \| cold feet
MODERATE	aggression \| back pain \| abdominal pain \| leg pain \| black stools \| tarry stools \| blisters \| blistering \| peeling of skin \| blistering of skin \| blood in urine \| blood in stool \| bloody stool \| blue-green urine \| orange-colored urine \| bluish skin color \| bluish-colored fingernails \| bluish-colored lips \| bluish-colored skin \| blurred vision \| decreased vision \| vision problems \|blurry vision \| cloudy vision \| rash \| numbness \| weakness in arms \| weakness in legs \| cellulitis \| change in vision \| changes in skin color \| changes in vision \| confusion \| pus \| swelling \| coughing up mucus \| dark colored urine
SEVERE	bone pain \| chest pain \| chest discomfort \| chest tightness \| chills \| coma \| constant pain \| convulsions \| seizures \| coughing up blood

EMOTION

AFFECTION	Adoration \| affection \| love \| fondness \| liking \| attraction \| caring \| tenderness \| compassion \| sentimentality \| lovin \| loving
LUST	Arousal \| desire \| lust \| lusting \| passion \| infatuation
LONGING	Longing
LOVE	AFFECTION \| LUST \| LONGING
JOY	Cheerfulness	amusement \| bliss \| blithe \| cheerful \| cheerfulness \| gay \| gaiety \| glee \| gleeful \| glad \| gladness \|jolly \| jolliness \| jovial \| joviality \| joy \| joyful \| delight \| delightful \| enjoyed \| enjoyment \|happy \| happiness \|jubilation \| elated \| elation \| ecstasy \| euphoria \| satisfaction.
	Zest	zeal \| zest \|excited \| exciting \| excitement \| thrill \| thrilling \| exhilaration \|
	Contentment	contentedness \| Contentment \| pleasure \| satisfied \| satisfaction \| gratified \| gratification
	Pride	proud \| prideful \| pridefulness \| triumph
	Optimism	expecting \|hope \| hopeful \| hoping \| hopefulness \| optimistic \| optimism
	Enthrallment	enthrall \| rapture
	Relief	ease \| relaxation \| alleviation
SURPRISE	Surprise	amazed \|surprise \| surprised \| surprising \| astonished \| astonishment \| astounded \| unexpected
ANGER	Irritation	irritation \| irritated \| irritating \| agitation \| annoyed \| annoyance \|disturbing \| grouchiness \| grumpiness
	Exasperation	frustration
	Rage	rage \| outrage \| fury \| wrath \| hostility \| ferocity \| bitterness \| hate \| loathing \| scorn \| spite \| vengefulness \| dislike \| resentment \| vengeance
	Disgust	revulsion \| contempt \| disgusting \| disgusted
	Envy	jealousy \| jealous \| envying
	Torment	tormented
SADNESS	Suffering	irritation \| irritated \| irritating \| agitation \| annoyed \| annoyance \| disturbing \|grouchiness \| grumpiness
	Sadness	depression \| depressing \| cheerless \| despair \| despairing \| dejected \| hopelessness \| heartbroken \| brokenhearted \| heartbreak \| heartache \| gloom \| glumness \|sad \| sadness \| unhappy \| unhappiness \| grief \| sorrow \| woe \| misery \| melancholy
	Disappointment	disappointment \| disappointed \| disappointing \| displeasure \| letdown
	Shame	shame \|regret \| regretful \| regretting \| remorseful \| guilt \| remorse \| guilty
	Neglect	isolation \| neglect \| loneliness \| rejection \| homesickness \| defeat \| dejection \| insecurity \| embarrassment \| humiliation \| insult
	Sympathy	sympathy \| compassion \| compassionate \| sympathizing \| sympathetic
FEAR	Horror	shock \| hysteria \| mortification \| fear \| fright \| horror \| terror \| scare \| panic \| scared \| frightened \| fearful \| panicking \| panicked \| panicky
	Nervousness	nervousness \| tenseness \| uneasiness \| apprehension \| worry \| distress \| dread
	Confuse	confusing \| confusion \| confuse
	Discontentment	discontented \| unsatisfied \| disgruntled \| displeased \| dissatisfied
	Embarrassment	embarrass \| embarrassed \| embarrassing \| abashment \| awkwardness \| abashed
	Forgiveness	forgive \| pardon \| forgiving
	Thankfulness	thankful \| appreciation \| gratitude \| gratefulness \| appreciative \| grateful
	Blame	blamed \| blaming
	Nervousness	nervousness \| tenseness \| tension \| uneasiness \| worry \| anxious \| nervous \| tense \| uneasy \| worried \| worrying
PRIMARY_EMOTION	SECONDARY_EMOTION	TERNARY_EMOTION

DRUGFORM

LIQUID	elixirs \| suspensions \| ointment \| oral spray \| emulsions
SOLID	tablet \| tab \| pill \| pills \| tablets \| tabs \| capsules \| capsule \| caplets \| cap \| dry powder inhaler \| DPI \| paste

Template Patterns

Template Patterns
1	PRONOUN:DOSAGE:DRUG:INTERVAL
2	PRONOUN:ROA:DOSAGE:DRUG
3	PRONOUN:DOSAGE:DRUG:ROA:INTERVAL
4	PRONOUN:DOSAGE:DRUG
5	PRONOUN:ROA:DOSAGE:INTERVAL
6	DRUG:ROA:DOSAGE
7	DRUG:DOSAGE:INTERVAL
8	DRUG:PRONOUN:DOSAGE
9	DOSAGE:SIDEEFFECT
10	DOSAGE:FEELING
11	DRUG:PRONOUN:ROA:DOSAGE
12	PRONOUN:DRUG:DOSAGE:INTERVAL
13	PRONOUN:DOSAGE:FEELING
14	PRONOUN:DOSAGE:SIDEEFFECT
15	DRUG:PRONOUN:DOSAGE:INTERVAL
16	PRONOUN:DRUG:INTERVAL:DOSAGE
17	PRONOUN:DOSAGE:DRUG:SIDEEFFECT
18	PRONOUN:INTENSITY:DRUG
19	INTENSITY:DRUG:DOSAGE:INTERVAL
20	INTENSITY:DRUG:DOSAGE:INTERVAL
21	PRONOUN:INTENSITY:FEELING
22	DRUG:PRONOUN:INTENSITY:DOSAGE
23	PRONOUN:DRUG:PRONOUN:DOSAGE
24	PRONOUN:DOSAGE:DRUG:FEELING
25	INTENSITY:DRUG:ROA:DOSAGE
26	DRUG:INTENSITY
27	DRUG:INTENSITY:DOSAGE
28	PRONOUN:INTENSITY:DOSAGE:INTERVAL
29	SIDEEFFECT:DOSAGE:PRONOUN
30	INTENSITY:DRUG
31	PRONOUN:ROA:DOSAGE:INTENSITY:DRUG
32	INTENSITY:DRUG:DOSAGE
33	PRONOUN:DRUG:INTENSITY
34	PRONOUN:PRONOUN:DOSAGE:INTERVAL
35	PRONOUN:DOSAGE:DRUG:DOSAGE:INTERVAL
36	PRONOUN:INTENSITY:DRUG:INTENSITY:DRUG
37	PRONOUN:DOSAGE:DRUG:ROA
38	PRONOUN:DOSAGE:INTERVAL
39	PRONOUN:SIDEEFFECT:INTENSITY
40	DRUG:INTERVAL:SIDEEFFECT
41	PRONOUN:DOSAGE:DRUG:DRUGFORM
42	DRUG:SIDEEFFECT
43	DRUG:VERB:DRUG
44	PRONOUN:DOSAGE:DRUGFORM
45	PRONOUN:VERB:DRUG
46	DRUG:VERB
47	INTERVAL:DRUG
48	DOSAGE:DRUG
49	PRONOUN:DOSAGE:PRONOUN
50	DOSAGE:DRUG:SIDEEFFECT
51	SIDEEFFECT:DRUG
52	SIDEEFFECT:DOSAGE
53	DRUG:DOSAGE:DRUG
54	DRUG:DRUG
55	PRONOUN
56	PRONOUN:DOSAGE

Corpus Annotations

SystemT

Annotation Query Language (AQL)

create dictionary periodDeterminer as
(
	'ago', 'prior', 'previous', 
	'since', 'now', 'next', 
	'last', 'later',
	'about', 'around', 
	'before', 'after',
	'several','almost', 
	'few', 'couple',
	'every','all' 
);

Search System

Evaluation

Funding

This project is sponsored by the National Institutes of Health (NIH) Grant No. R21 DA030571-01A1 awarded to the Ohio Center of Excellence in Knowledge-enabled Computing (Kno.e.sis) and the Center for Treatment, Interventions and Addictions Research (CITAR) titled “A Study of Social Web Data on Buprenorphine Abuse using Semantic Web Technology.” Any opinions, findings, conclusions or recommendations expressed in this material are those of the investigator(s) and do not necessarily reflect the views of the National Institutes of Health.

Contact: Delroy Cameron

@@ Line 213: / Line 213: @@
 ===Simple Template Classes===
 ====PRONOUN====
-{| style="width: 60%; height: 200px" border="1"
+{| style="width: 70%; height: 200px" border="1"
 |-
 | align="center" | DEMONSTRATIVE_PRONOUN || this | that | these | those
@@ Line 232: / Line 232: @@
 ====ROA&nbsp;(Route-of-Administration)====
-{| style="width: 60%; height: 200px" border="1"
+{| style="width: 70%; height: 200px" border="1"
 | style="width: 200px;" | ''ENTERAL'' || ate | chewing | drink | eat | insufflate | plug | plugged | smoke | smoked | sniff | snort
 |-
@@ Line 272: / Line 272: @@
 ====SIDEEFFECT====
-{| style="width: 60%; height: 200px" border="1"
+{| style="width: 70%; height: 200px" border="1"
 | style="width: 200px;" | ''MILD'' || bruising | itching | tingling | changes in behavior | cold | cold hands | cold feet
 |-
@@ Line 355: / Line 355: @@
 ====DRUGFORM====
-{| style="width: 60%; height: 100px;" border="1"
+{| style="width: 70%; height: 100px;" border="1"
 | ''LIQUID'' || syrups | elixirs | suspensions | ointment | oral spray | emulsions
 |-

Difference between revisions of "Knowledge-Aware-Search"