Difference between revisions of "Knowledge-Aware-Search"

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====Global Equivalence====
=====Global Equivalence=====
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Revision as of 18:23, 5 May 2013

This wiki contains documentation for the article on Knowledge-Aware Search, developed as part of the PREDOSE project. PREDOSE is the acronym for PREscription Drug abuse Online Surveillance and Epidemiology, which is an inter-disciplinary project between the Ohio Center of Excellence in Knowledge-enabled Computing (Kno.e.sis) and the Center for Interventions, Treatment and Addictions Research (CITAR) at Wright State University.

Overview

People

Delroy Cameron
Nishita Jaykumar
Gary A. Smith
Gaurish Anand
Swapnil Soni
Krishnaprasad Thirunarayan
Kera Z. Watkins
Amit P. Sheth

Framework

Ontology

Grammar and Language Specification

LEGEND

ONTOLOGY
RULES
LEXICON
EXAMPLES


Template Classes

Class Name Class Source Class Type
INTERVAL Rules Compound
FREQUENCY Rules Compound
DOSAGE Rules Compound
ENTITY Ontology Simple
PRONOUN Lexicon Simple
INTENSITY Lexicon Simple
ROA (Route-Of-Administration) Lexicon Simple
SIDEEFFECT Lexicon Simple
EMOTION Lexicon Simple
DRUGFORM Lexicon Simple
SENTIMENT Lexicon Simple

 

Global Equivalence

> greater than | more than | above | in excess of | slightly above | little more | bit more | slightly more
< less than | lower than | below | in lack of | slightly below | little less | bit less | slightly less
= exactly | precisely
>= greater than or equal to | more than | above | in excess of | slightly above | little more | bit more | slightly more | exactly | precisely
<= less than or equal to | less than | lower than | below | in lack of | slightly below | little less | bit less | slightly less | exactly | precisely

 

Global Definitions

NUMERIC_AMOUNT -999.99 | ... | 0 | ... | 3-4 | ... | 24/7 | 999
WORDED_AMOUNT one | once | two | twice | three | thrice | four | five | six | seven | eight | nine | ten | eleven | twelve | thirteen | fourteen | fifteen | sixteen | seventeen | eighteen | nineteen | twenty | thirty | forty | fifty | sixty | seventy | eighty | ninty | hundred
NUMBER 0 | 1 | ... | 100
AMOUNT NUMBER |
WORDED_AMOUNT
RANGE [0 - NUMBER] WORDS

 

Compound Template Classes

INTERVAL

PAST_DETERMINER ago | prior | previous | since | before | last | past
PRESENT_DETERMINER now | about | around | several | couple | every | all | this
FUTURE_DETERMINER next | later | after
PERIOD PAST_DETERMINER |
PRESENT_DETERMINER |
FUTURE_DETERMINER
TIME_INDICATOR
HOUR hour | hours | hr | hrs
MINUTE minute | minutes | min | mins
SECOND second | seconds | sec | secs
DURATION_INDICATOR
DECADE decade | decades
YEAR year | years | yr | yrs | annum
MONTH month | months | mth| mths | mo
WEEK week | weeks| wk | wks
DAY day | days | night | nights | nite | nites | morning | mornings | mornin | evening | evenin | evenings | afternoon | noon
DURATION_PERIOD PAST_DETERMINER RANGE PERIOD years ago, weeks prior
PRESENT_DETERMINER RANGE PERIOD weeks now
FUTURE_DETERMINER RANGE PERIOD weeks later, days after
PERIOD_DURATION PAST_DETERMINER RANGE DURATION_INDICATOR last year, previous day
PRESENT_DETERMINER RANGE DURATION_INDICATOR about a year, around a month
FUTURE_DETERMINER RANGE DURATION_INDICATOR later years, next day
TIME_PERIOD TIME_INDICATOR RANGE PAST_DETERMINER hours ago, minutes before
TIME_INDICATOR RANGE PRESENT_DETERMINER hours now
TIME_INDICATOR RANGE FUTURE_DETERMINER hours later, minutes after
PERIOD_TIME PAST_DETERMINER RANGE TIME_INDICATOR last hour
PRESENT_DETERMINER RANGE TIME_INDICATOR several hours, couple of minutes
FUTURE_DETERMINER RANGE TIME_INDICATOR next hour
AMOUNT_TIME_PERIOD AMOUNT RANGE TIME_PAST_PERIOD 5 minutes ago
AMOUNT RANGE TIME_PRESENT_PERIOD 10 hours now
AMOUNT RANGE TIME_FUTURE_PERIOD 5 minutes later
AMOUNT_TIME AMOUNT RANGE TIME_INDICATOR 15 seconds
PERIOD_AMOUNT_TIME PAST_DETERMINER RANGE AMOUNT_TIME last 2 hours, past 2 minutes
PRESENT_DETERMINER RANGE AMOUNT_TIME around 2 hours
FUTURE_DETERMINER RANGE AMOUNT_TIME next 15 seconds, after 2 minutes
AMOUNT_DURATION_PERIOD AMOUNT RANGE DURATION_PAST_PERIOD 5 years ago
AMOUNT RANGE DURATION_PRESENT_PERIOD 5 years now
AMOUNT RANGE DURATION_FUTURE_PERIOD 5 years later, 9 months after
AMOUNT_DURATION AMOUNT RANGE DURATION_INDICATOR 15 months
PERIOD_AMOUNT_DURATION PAST_DETERMINER RANGE AMOUNT_DURATION last 15 weeks, last 2 years
PRESENT_DETERMINER RANGE AMOUNT_DURATION about 3 monts, around five years
FUTURE_DETERMINER RANGE AMOUNT_DURATION next 15 weeks, after 2 years
INTERVAL DURATION_PERIOD |
PERIOD_DURATION |
TIME_PERIOD |
PERIOD_TIME |
AMOUNT_TIME_PERIOD |
AMOUNT_TIME |
PERIOD_AMOUNT_TIME |
AMOUNT_DURATION_PERIOD |
AMOUNT_DURATION |
PERIOD_AMOUNT_DURATION

 

FREQUENCY

FREQUENCY_ITEM hourly | daily | weekly | bi-weekly | biweekly | monthly | yearly | annually
FREQUENCY_INDICATOR times | times a | times an | both times
PER_INDICATOR per | / | FREQUENCY_INDICATOR
PER_SECOND PER_INDICATOR RANGE SECOND /second, times a second
PER_MINUTE PER_INDICATOR RANGE MINUTE per minute, /minute
PER_HOUR PER_INDICATOR RANGE HOUR | hourly per hour, times an hour
PER_DAY PER_INDICATOR RANGE DAY | daily | nightly / day, per day
PER_WEEK PER_INDICATOR RANGE WEEK | weekly, bi-weekly | biweekly per week, /week
PER_MONTH PER_INDICATOR RANGE MONTH | monthly | bi-monthly | bimonthly /month, times a month
PER_YEAR PER_INDICATOR RANGE YEAR | yearly | annually per year, /year
PER_DECADE PER_INDICATOR RANGE DECADE times a year, per year
PER_TIMEINDICATOR PER_SECOND |
PER_MINUTE |
PER_HOUR |
PER_DAY |
PER_WEEK |
PER_MONTH |
PER_YEAR |
PER_DECADE
per min, per hour, /min, /hour
PER_DURATION_INDICATOR PER_INDICATOR RANGE DURATION_INDICATOR per day, per week, /week, /month
AMOUNT_PER_TIME_INDICATOR AMOUNT RANGE PER_TIME_INDICATOR 5 per min, per hour, 24 mg /min
AMOUNT_FREQUENCY AMOUNT RANGE FREQUENCY_INDICATOR 5 times
AMOUNT_FREQUENCY_DURATION AMOUNT_FREQUENCY RANGE DURATION_INDICATOR 5 times a day
FREQUENCY_DURATION FREQUENCY_INDICATOR RANGE DURATION_INDICATOR times a day
FREQUENCY_TIME FREQUENCY_INDICATOR RANGE TIME_INDICATOR times a hour
PERIOD_FREQUENCY_DURATION PERIOD_DETERMINER RANGE FREQUENCY_INDICATOR several times a day
PERIOD_FREQUENCY_TIME PERIOD_DETERMINER RANGE FREQUENCY_TIME several times a day
AMOUNT_FREQUENCY_TIME AMOUNT RANGE FREQUENCY_TIME several times a day
AMOUNT_PER_TIME AMOUNT RANGE PER_TIME_INDICATOR 5 per min, per hour, 24 mg /min
AMOUNT_PER_DURATION AMOUNT RANGE FREQUENCY_TIME 5 per day, 10 per week
FREQUENCY PER_TIME_INDICATOR |
PER_DURATION_INDICATOR |
AMOUNT_FREQUENCY_DURATION |
PERIOD_FREQUENCY_DURATION |
PERIOD_FREQUENCY_TIME |
AMOUNT_FREQUENCY_TIME |
AMOUNT_PER_TIME |
AMOUNT_PER_DURATION
|
FREQUENCY_ITEM

 

DOSAGE

CUBIC_CENTIMETER cc | ccs | cubic c | cubic cs | cubic centimeter | cubic centimeters | cubic centimetres | cubic centimetre | cubic centi-meter | cubic centi-meters | cubic centi-metre | cubic centi-metres
BAG bag | bags
POUND lb | lbs | pound | pounds
GRAM g | gs | gm | gms | gram | grams
MILLIGRAM mg | mgs | milligram | milligrams | milli-gram | milli-grams
MICROGRAM ug | ugs | mcg | mcgs | microgram | micrograms | micro-gram | micro-grams
KILOGRAM kg | kgs | kilogram | kilograms | kilo-gram | kilo-grams
LITER litre | litres | liter | liters
MILLILITER ml | mls | millilitre | millilitres | milliliter | milliliters | milli-litre | milli-litres | milli-liter | milli-liters
MICROLITER mcl | mcls | microlitre | microlitres | microliter | microliters | micro-litre | micro-litres | micro-liter | micro-liters
OUNCE oz | ozs | ounce | ounces
TABLET tablet | tablets | tab | tabs
UNIT CUBIC_CENTIMETER |
BAG |
POUND |
GRAM |
MILLIGRAM |
MICROGRAM |
KILOGRAM |
LITER |
MILLILITER |
MICROLITER |
OUNCE |
TABLET
NUMERIC_AMOUNT_UNIT NUMBER_AMOUNT |
UNIT
1-5 grams, 2 mcg
WORDED_NUMERIC_AMOUNT_UNIT WORD_AMOUNT |
UNIT
hundred milligrams, one ecstasy tablet
DOSAGE NUMERIC_AMOUNT_UNIT |
WORDED_NUMERIC_AMOUNT_UNIT

 

Simple Template Classes

PRONOUN

DEMONSTRATIVE_PRONOUN this | that | these | those
PERSONAL_PRONOUN i | me | you | she | her | he | him | it | we | us | they | them
POSSESSIVE_PRONOUN my | our | ours | your | yours | his | her | hers | its | their | theirs | mine
REFLEXIVE_PRONOUN myself | ourselves | yourself | yourselves | himself | herself | itself | themselves
RELATIVE_PRONOUN that | which | who | whom | whose | whichever | whoever | whomever
INDEFINITE_PRONOUN anybody | anyone | anything | each | either | everybody | everyone | everything | neither | nobody | no one | nothing | one | somebody | someone | something | both | few | many | several | all | any | most | none | some
INTERROGATIVE_PRONOUN what | who | which | whom | whose

 

INTENSITY

LOW low | very low | lower | lower than | lowest | small | very small | smaller | smaller than | smallest | less | less than | less is more | least
AVERAGE average | ideal
HIGH high | very high | higher | highest | large | very large | larger | largest | more | most | excess | excessive

 

ROA (Route-of-Administration)

ENTERAL ate | chewing | drink | eat | insufflate | plug | plugged | smoke | smoked | sniff | snort
EPIDURAL inject | injected | injection
INTRAARTERIAL IV | IVed | IV’ed | IVing | IV’ing | inject | injected | injection
INTRACARDIAC inject | injected | injection
INTRACEREBRAL inject | injected | injection
INTRADERMAL IV | IV’ed | IVing | inject | injected | injection | sniff | snort | snorting | bumping | railing | doozing
INTRAMUSCULAR inject | injected | injection | skin poppin
INTRAVENOUS IV | IVed | IV’ed | IVing | IV’ing | inject | injected | injection
INHALATIONAL smoke | smokes | smoked | smoking | sniff | sniffed | sniffing |snort | snorted | snorting | bumping | railing | doozing
INTRAPERITONEAL inject | injected | injection
INTRATHECAL inject | injected | injection
INTRAOSSEOUS INFUSION inject | injected | injection
NASAL sniff | snort | snorting | bumping | railing | doozing
PARENTERAL inject | injected | injection
TRANSDERMAL patch | patches
TRANSMUCOSAL snort | snorted | snorting | sniff | sniffed | sniffing | bumping | railing | doozing
TOPICAL patch | patches
SUBCUTANEOUS inject | injected | injection

 

SIDEEFFECT

MILD bruising | itching | tingling | changes in behavior | cold | cold hands | cold feet
MODERATE abnormal vision | aggression | back pain | abdominal pain | leg pain | black stools | tarry stools | blisters | blistering | peeling of skin | blistering of skin | blood in urine | blood in stool | bloody stool | blue-green urine | orange-colored urine | bluish skin color | bluish-colored fingernails | bluish-colored lips | bluish-colored skin | blurred vision | decreased vision | vision problems |blurry vision | cloudy vision | rash | numbness | weakness in arms | weakness in legs | cellulitis | change in vision | changes in skin color | changes in vision | confusion | pus | swelling | coughing up mucus | dark colored urine
SEVERE abnormal heartbeat | bone pain | chest pain | chest discomfort | chest tightness | chills | coma | constant pain | convulsions | seizures | coughing up blood

 

EMOTION

AFFECTION adoration | affection | love | fondness | liking | attraction | caring | tenderness | compassion | sentimentality | lovin | loving
LUST arousal | desire | lust | lusting | passion | infatuation
LONGING longing
CHEERFULNESS amused | amusement | bliss | blithe | cheerful | cheerfulness | gay | gaiety | glee | gleeful | glad | gladness | jolly | jolliness | jovial | joviality | joy | joyful | delight | delightful | enjoyed | enjoyment |happy | happiness |jubilation | elated | elation | ecstasy | euphoria | satisfaction
ZEST enthusiasm | zeal | zest |excited | exciting | excitement | thrill | thrilling | exhilaration |
CONTENTMENT contented | contentedness | Contentment | pleasure | satisfied | satisfaction | gratified | gratification
PRIDE pride | proud | prideful | pridefulness | triumph
OPTIMISM eagerness | expecting | hope | hopeful | hoping | hopefulness | optimistic | optimism
ENTHRALLMENT enthrallment | enthrall | rapture
RELIEF relief | ease | relaxation | alleviation
SURPRISE amazement | amazed | surprise | surprised | surprising | astonished | astonishment | astounded | unexpected
IRRITATION aggravation |irritation | irritated | irritating | agitation | annoyed | annoyance |disturbing | grouchiness | grumpiness
EXASPERATION exasperation | frustration
RAGE anger | rage | outrage | fury | wrath | hostility | ferocity | bitterness | hate | loathing | scorn | spite | vengefulness | dislike | resentment | vengeance
DISGUST disgust | revulsion | contempt | disgusting | disgusted
ENVY envy | jealousy | jealous | envying
TORMENT torment | tormented
SUFFERING aggravation | irritation | irritated | irritating | agitation | annoyed | annoyance | disturbing | grouchiness | grumpiness | suffer
DEPRESSION depressed | depression | depressing | cheerless | despair | despairing | dejected | hopelessness | heartbroken | brokenhearted | heartbreak | heartache | gloom | glumness |sad | sadness | unhappy | unhappiness | grief | sorrow | woe | misery | melancholy
DISAPPOINTMENT dismay | disappointment | disappointed | disappointing | displeasure | letdown
SHAME ashamed | shame | regret | regretful | regretting | remorseful | guilt | remorse | guilty
NEGLECT alienation | isolation | neglect | loneliness | rejection | homesickness | defeat | dejection | insecurity | embarrassment | humiliation | insult
SYMPATHY pity | sympathy | compassion | compassionate | sympathizing | sympathetic
HORROR alarm | shock | hysteria | mortification | fear | fright | horror | terror | scare | panic | scared | frightened | fearful | panicking | panicked | panicky
CONFUSE confused | confusing | confusion | confuse
DISCONTENTMENT discontent | discontented | unsatisfied | disgruntled | displeased | dissatisfied
EMBARRASSMENT embarrassment | embarrass | embarrassed | embarrassing | abashment | awkwardness | abashed
FORGIVENESS forgiveness | forgive | pardon | forgiving
THANKFULNESS thankfulness | thankful | appreciation | gratitude | gratefulness | appreciative | grateful
BLAME blame | blamed | blaming
NERVOUSNESS anxiety | nervousness | tenseness | tension | uneasiness | worry | anxious | nervous | tense | uneasy | worried | worrying
LOVE AFFECTION | LUST | LONGING
JOY CHEERFULNESS | ZEST | CONTENTMENT | PRIDE | OPTIMISM | ENTHRALLMENT | RELIEF
ANGER IRRITATION | EXASPERATION | RAGE | DISGUST | ENVY | TORMENT
SADNESS SUFFERING | DEPRESSION | DISAPPOINTMENT | SHAME | NEGLECT | SYMPATHY
FEAR HORROR | NERVOUSNESS

 

DRUGFORM

LIQUID syrups | elixirs | suspensions | ointment | oral spray | emulsions
SOLID powder | tablet | tab | pill | pills | tablets | tabs | capsules | capsule | caplets | cap | dry powder inhaler | DPI | paste

 

SENTIMENT

POSITIVE Im glad | I'm glad | Luckily | awesome | benefit | best choices | best for me | best | didnt feel sick | didn't feel sick | easier | effective | efficacy | emotions come back | favorite | feelings of happiness | get me through | good | great | handy | help A LOT | help immensely | help you | helped me out | helpin more | helping | helps | highly respectable | incredible | isnt a waste | i'snt a waste | it potentiates | most certainly help | normal | pleasant | pretty | prevents any problems | ready | relieved | safety | should be happy | stopped the W/D | to get ok | worked for me | worked perfectly | working | works | works pretty well | would help
NEGATIVE Big fucking mistake | threw up | It was bad | Its really rough | It' s really rough | NEVER work | No longer | SEVERELY dangerous | a number on | avoid using it | bad thing | bad | cant stop sneezing | could be toxic | dangerous | didnt do shit | didn't do shit | didnt go | didn't go | dirty whore | disappointed | dizzy | dont work | fall | feel sick | feel weird | freaking out | fucked up | fucking awful | fucking ever | hard | harm | hated | horrible side effects | horrible withdrawal | hurt | ineffectiveness | it sounds dreadful | lazy | miserable | nauseous | negative | neurotoxicity | no free lunch | no goer | no reduction | not sure | not worth | potential dangers | pretty shitty | prolongs the inevitable | rough | scary | shit | sketchy | still dependent | tremor | turn out bad | very wary | vomiting hard core | want to puke | weird pressure | weird | will not work | wont work | won't work | worst heartburn | worst migraine | worth a shit | wrong

 

Template Patterns

Template Patterns
1 PRONOUN:DOSAGE:ENTITY:INTERVAL
2 PRONOUN:ROA:DOSAGE:ENTITY
3 PRONOUN:DOSAGE:ENTITY:ROA:INTERVAL
4 PRONOUN:DOSAGE:ENTITY
5 PRONOUN:ROA:DOSAGE:INTERVAL
6 ENTITY:ROA:DOSAGE
7 ENTITY:DOSAGE:INTERVAL*
8 ENTITY:PRONOUN:DOSAGE
9 DOSAGE:SIDEEFFECT
10 DOSAGE:FEELING
11 ENTITY:PRONOUN:ROA:DOSAGE
12 PRONOUN:ENTITY:DOSAGE:INTERVAL
13 PRONOUN:DOSAGE:FEELING
14 PRONOUN:DOSAGE:SIDEEFFECT
15 ENTITY:PRONOUN:DOSAGE:INTERVAL
16 PRONOUN:ENTITY:INTERVAL:DOSAGE
17 PRONOUN:DOSAGE:ENTITY:SIDEEFFECT
18 PRONOUN:INTENSITY:ENTITY
19 INTENSITY:ENTITY:DOSAGE:INTERVAL
20 INTENSITY:ENTITY:DOSAGE:INTERVAL
21 PRONOUN:INTENSITY:FEELING
22 ENTITY:PRONOUN:INTENSITY:DOSAGE
23 PRONOUN:ENTITY:PRONOUN:DOSAGE
24 PRONOUN:DOSAGE:ENTITY:FEELING
25 INTENSITY:ENTITY:ROA:DOSAGE
26 ENTITY:INTENSITY
27 ENTITY:INTENSITY:DOSAGE
28 PRONOUN:INTENSITY:DOSAGE:INTERVAL
29 SIDEEFFECT:DOSAGE:PRONOUN
30 INTENSITY:ENTITY
31 PRONOUN:ROA:DOSAGE:INTENSITY:ENTITY
32 INTENSITY:ENTITY:DOSAGE
33 PRONOUN:ENTITY:INTENSITY
34 PRONOUN:PRONOUN:DOSAGE:INTERVAL
35 PRONOUN:DOSAGE:ENTITY:DOSAGE:INTERVAL
36 PRONOUN:INTENSITY:ENTITY:INTENSITY:ENTITY
37 PRONOUN:DOSAGE:ENTITY:ROA
38 PRONOUN:DOSAGE:INTERVAL
39 PRONOUN:SIDEEFFECT:INTENSITY
40 ENTITY:INTERVAL:SIDEEFFECT
41 PRONOUN:DOSAGE:ENTITY:DRUGFORM
42 ENTITY:SIDEEFFECT
43 ENTITY:VERB:ENTITY
44 PRONOUN:DOSAGE:DRUGFORM
45 PRONOUN:VERB:ENTITY
46 ENTITY:VERB
47 INTERVAL:ENTITY
48 DOSAGE:ENTITY
49 PRONOUN:DOSAGE:PRONOUN
50 DOSAGE:ENTITY:SIDEEFFECT
51 SIDEEFFECT:ENTITY
52 SIDEEFFECT:DOSAGE
53 ENTITY:DOSAGE:ENTITY*
54 ENTITY:ENTITY
55 PRONOUN
56 PRONOUN:DOSAGE
57 ENTITY:FREQUENCY:SIDEEFFECT
58 ENTITY:FREQUENCY:EMOTION
59 ENTITY:PRONOUN:SIDEEFFECT
60 PRONOUN:ENTITY:SIDEEFFECT
61 ENTITY:PRONOUN:SENTIMENT
62 ENTITY:FREQUENCY:SENTIMENT

 

Corpus Annotations

SystemT

Annotation Query Language (AQL)

create dictionary periodDeterminer as
(
	'ago', 'prior', 'previous', 
	'since', 'now', 'next', 
	'last', 'later',
	'about', 'around', 
	'before', 'after',
	'several','almost', 
	'few', 'couple',
	'every','all' 
);

Search System

Information Need

User Query

System Query

Evaluation

Funding

This project is sponsored by the National Institutes of Health (NIH) Grant No. R21 DA030571-01A1 awarded to the Ohio Center of Excellence in Knowledge-enabled Computing (Kno.e.sis) and the Center for Treatment, Interventions and Addictions Research (CITAR) titled “A Study of Social Web Data on Buprenorphine Abuse using Semantic Web Technology.” Any opinions, findings, conclusions or recommendations expressed in this material are those of the investigator(s) and do not necessarily reflect the views of the National Institutes of Health.

Contact: Delroy Cameron